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Retrotransposon Activation Contributes to Neurodegeneration in a Drosophila TDP-43 Model of ALS

Lisa Krug, Nabanita Chatterjee, Rebeca Borges-Monroy, Stephen Hearn, Wen-Wei Liao, Kathleen Morrill, Lisa Prazak, Yung-Heng Chang, Richard M Keegan, Nikolay Rozhkov, Delphine Theodorou, Molly Hammell, Josh Dubnau
doi: https://doi.org/10.1101/090175
Lisa Krug
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
2Watson School of Biological Sciences, Cold Spring Harbor Laboratory
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Nabanita Chatterjee
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
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Rebeca Borges-Monroy
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
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Stephen Hearn
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
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Wen-Wei Liao
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
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Kathleen Morrill
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
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Lisa Prazak
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
3Farmingdale State College, Farmingdale, NY 11735
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Yung-Heng Chang
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
4Department of Anesthesiology, Stony Brook School of Medicine, 11794
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Richard M Keegan
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
3Farmingdale State College, Farmingdale, NY 11735
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Nikolay Rozhkov
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
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Delphine Theodorou
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
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Molly Hammell
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
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Josh Dubnau
1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
2Watson School of Biological Sciences, Cold Spring Harbor Laboratory
4Department of Anesthesiology, Stony Brook School of Medicine, 11794
5Department of Neurobiology and Behavior, Stony Brook School of Medicine, 11794
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ABSTRACT

Amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD) are two incurable neurodegenerative disorders that exist on a symptomological spectrum and share both genetic underpinnings and pathophysiological hallmarks. Functional abnormality of TAR DNA-binding protein 43 (TDP-43), an aggregation-prone RNA and DNA binding protein, is observed in the vast majority of both familial and sporadic ALS cases and in ∼40% of FTLD cases, but the cascade of events leading to cell death are not understood. We have expressed human TDP-43 (hTDP-43) in Drosophila neurons and glia, a model that recapitulates many of the characteristics of TDP-43-linked human disease including protein aggregation pathology, locomotor impairment, and premature death. We report that such expression of hTDP-43 impairs small interfering RNA (siRNA) silencing, which is the major post-transcriptional mechanism of retrotransposable element (RTE) control in somatic tissue. This is accompanied by de-repression of a panel of both LINE and LTR families of RTEs, with somewhat different elements being active in response to hTDP-43 expression in glia versus neurons. hTDP-43 expression in glia causes an early and severe loss of control of a specific RTE, the endogenous retrovirus (ERV) gypsy. We demonstrate that gypsy causes the degenerative phenotypes in these flies because we are able to rescue the toxicity of glial hTDP-43 either by genetically blocking expression of this RTE or by pharmacologically inhibiting RTE reverse transcriptase activity. Moreover, we provide evidence that activation of DNA damage-mediated programmed cell death underlies both neuronal and glial hTDP-43 toxicity, consistent with RTE-mediated effects in both cell types. Our findings suggest a novel mechanism in which RTE activity contributes to neurodegeneration in TDP-43-mediated diseases such as ALS and FTLD.

AUTHOR SUMMARY Functional abnormality of TAR DNA-binding protein 43 (TDP-43), an aggregation-prone RNA and DNA binding protein, is observed in the vast majority of both familial and sporadic ALS cases and in ∼40% of FTLD cases, and mutations in TDP-43 are causal in a subset of familial ALS cases. Although cytoplasmic inclusions of this mostly nuclear protein are a hallmark of the disease, the cascade of events leading to cell death are not understood. We demonstrate that expression of human TDP-43 (hTDP-43) in Drosophila neurons or glial cells, which results in toxic cytoplasmic accumulation of TDP-43, causes broad expression of retrotransposons. In the case of glial hTDP-43 expression, the endogenous retrovirus (ERV) gypsy causally contributes to degeneration because inhibiting gypsy genetically or pharmacologically is sufficient to rescue the phenotypic effects. Moreover, we demonstrate that activation of DNA damage-mediated programmed cell death underlies hTDP-43 and gypsy mediated toxicity. Finally, we find that hTDP-43 pathology impairs small interfering RNA silencing, which is an essential system that normally protects the genome from RTEs. These findings suggest a novel mechanism in which a storm of retrotransposon activation drives neurodegeneration in TDP-43 mediated diseases such as ALS and FTLD.

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Posted November 28, 2016.
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Retrotransposon Activation Contributes to Neurodegeneration in a Drosophila TDP-43 Model of ALS
Lisa Krug, Nabanita Chatterjee, Rebeca Borges-Monroy, Stephen Hearn, Wen-Wei Liao, Kathleen Morrill, Lisa Prazak, Yung-Heng Chang, Richard M Keegan, Nikolay Rozhkov, Delphine Theodorou, Molly Hammell, Josh Dubnau
bioRxiv 090175; doi: https://doi.org/10.1101/090175
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Retrotransposon Activation Contributes to Neurodegeneration in a Drosophila TDP-43 Model of ALS
Lisa Krug, Nabanita Chatterjee, Rebeca Borges-Monroy, Stephen Hearn, Wen-Wei Liao, Kathleen Morrill, Lisa Prazak, Yung-Heng Chang, Richard M Keegan, Nikolay Rozhkov, Delphine Theodorou, Molly Hammell, Josh Dubnau
bioRxiv 090175; doi: https://doi.org/10.1101/090175

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