Article Information
History
- April 23, 2017.
Article Versions
- Version 1 (February 18, 2017 - 14:25).
- You are viewing Version 2, the most recent version of this article.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Author Information
- Metsky H.C.*,1,2,
- Matranga C.B.*,1,
- Wohl S.*,1,3,
- Schaffner S.F.*,1,3,4,
- Freije C.A.1,3,
- Winnicki S.M.1,
- West K.1,
- Qu J.1,
- Baniecki M.L.1,
- Gladden-Young A.1,
- Lin A.E.1,3,
- Tomkins-Tinch C.H.1,
- Ye S.H.1,5,
- Park D.J.1,
- Luo C.Y.1,3,
- Barnes K.G.1,3,
- Shah R.R.1,6,
- Chak B.1,3,
- Barbosa-Lima G.7,
- Delatorre E.8,
- Vieira Y.R.7,
- Paul L.M.9,
- Tan A.L.9,
- Barcellona C.M.9,
- Porcelli M.C.10,
- Vasquez C.10,
- Cannons A.C.11,
- Cone M.R.11,
- Hogan K.N.11,
- Kopp E.W.11,
- Anzinger J.J.12,
- Garcia K.F.13,
- Parham L.A.13,
- Gélvez Ramírez R.M.14,
- Miranda Montoya M.C.14,
- Rojas D.P.15,
- Brown C.M.16,
- Hennigan S.16,
- Sabina B.16,
- Scotland S.16,
- Gangavarapu K.17,
- Grubaugh N.D.17,
- Oliveira G.18,
- Robles-Sikisaka R.17,
- Rambaut A.19,20,
- Gehrke L.21,22,
- Smole S.16,
- Halloran M.E.23,24,
- Villar Centeno L.A.14,
- Mattar S.25,
- Lorenzana I.13,
- Cerbino-Neto J.7,
- Valim C.4,26,
- Degrave W.27,
- Bozza P.T.28,
- Gnirke A.1,
- Andersen K.G.17,18,29,†,
- Isern S.†,9,
- Michael S.F.†,9,
- Bozza F.A.†,7,30,
- Souza T.M.L.†,¶,31,32,
- Bosch I.†,21,22,
- Yozwiak N.L.†,1,3,
- MacInnis B.L.†,1,4,¶ and
- Sabeti P.C.†,1,3,4
- 1Broad Institute of MIT and Harvard, Cambridge MA, USA
- 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge MA, USA
- 3Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge MA, USA
- 4Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Harvard University, Boston MA, USA
- 5Harvard-MIT Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge MA, USA
- 6Harvard University Extension School, Cambridge, MA, USA
- 7National Institute of Infectious Diseases Evandro Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro RJ, Brazil
- 8Laboratório de AIDS e Imunologia Molecular, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro RJ, Brazil
- 9Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers FL, USA
- 10Miami-Dade County Mosquito Control, Miami FL, USA
- 11Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa FL, USA
- 12Department of Microbiology, The University of the West Indies, Mona, Kingston, Jamaica
- 13Instituto de Investigacion en Microbiologia, Universidad Nacional Autónoma de Honduras, Honduras
- 14Grupo de Epidemiología Clínica, Universidad Industrial de Santander, Bucaramanga, Colombia
- 15Department of Epidemiology, College of Public Health and Health Professions, University of Florida, Gainesville FL, USA
- 16Massachusetts Department of Public Health, Jamaica Plain MA, USA
- 17Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla CA, USA
- 18Scripps Translational Science Institute, La Jolla CA, USA
- 19University of Edinburgh, Edinburgh, UK
- 20Fogarty International Center, National Institutes of Health, Bethesda MD, USA
- 21Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge MA, USA
- 22Department of Microbiology and Immunobiology, Harvard Medical School, Boston MA, USA
- 23Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle WA, USA
- 24Department of Biostatistics, University of Washington, Seattle WA, USA
- 25Institute for Tropical Biology Research, Universidad de Córdoba, Colombia
- 26Department of Osteopathic Medical Specialties, Michigan State University, East Lansing, MI, USA
- 27Fiocruz, Instituto Oswaldo Cruz, Laboratório de Genômica Funcional e Bioinformática, Rio de Janeiro RJ, Brazil
- 28Laboratório de Imunofarmacologia, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro RJ, Brazil
- 29Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla CA, USA
- 30D'Or Institute for Research and Education, Brazil
- 31National Institute for Science and Technology on Innovation on Neglected Diseases, Fiocruz, Rio de Janeiro RJ, Brazil
- 32Center for Technological Development in Health, Fiocruz, Rio de Janeiro RJ, Brazil
- ↵¶co-corresponding author: B.L.M. (bronwyn{at}broadinstitute.org); T.M.L.S. (tmoreno{at}cdts.fiocruz.br)