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Genome sequencing reveals Zika virus diversity and spread in the Americas

Metsky H.C., Matranga C.B., Wohl S., Schaffner S.F., Freije C.A., Winnicki S.M., West K., Qu J., Baniecki M.L., Gladden-Young A., Lin A.E., Tomkins-Tinch C.H., Ye S.H., Park D.J., Luo C.Y., Barnes K.G., Shah R.R., Chak B., Barbosa-Lima G., Delatorre E., Vieira Y.R., Paul L.M., Tan A.L., Barcellona C.M., Porcelli M.C., Vasquez C., Cannons A.C., Cone M.R., Hogan K.N., Kopp E.W., Anzinger J.J., Garcia K.F., Parham L.A., Gélvez Ramírez R.M., Miranda Montoya M.C., Rojas D.P., Brown C.M., Hennigan S., Sabina B., Scotland S., Gangavarapu K., Grubaugh N.D., Oliveira G., Robles-Sikisaka R., Rambaut A., Gehrke L., Smole S., Halloran M.E., Villar Centeno L.A., Mattar S., Lorenzana I., Cerbino-Neto J., Valim C., Degrave W., Bozza P.T., Gnirke A., Andersen K.G., Isern S., Michael S.F., Bozza F.A., Souza T.M.L., Bosch I., Yozwiak N.L., MacInnis B.L., Sabeti P.C.
doi: https://doi.org/10.1101/109348

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doi 
https://doi.org/10.1101/109348
History 
  • April 23, 2017.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. Metsky H.C.*,1,2,
  2. Matranga C.B.*,1,
  3. Wohl S.*,1,3,
  4. Schaffner S.F.*,1,3,4,
  5. Freije C.A.1,3,
  6. Winnicki S.M.1,
  7. West K.1,
  8. Qu J.1,
  9. Baniecki M.L.1,
  10. Gladden-Young A.1,
  11. Lin A.E.1,3,
  12. Tomkins-Tinch C.H.1,
  13. Ye S.H.1,5,
  14. Park D.J.1,
  15. Luo C.Y.1,3,
  16. Barnes K.G.1,3,
  17. Shah R.R.1,6,
  18. Chak B.1,3,
  19. Barbosa-Lima G.7,
  20. Delatorre E.8,
  21. Vieira Y.R.7,
  22. Paul L.M.9,
  23. Tan A.L.9,
  24. Barcellona C.M.9,
  25. Porcelli M.C.10,
  26. Vasquez C.10,
  27. Cannons A.C.11,
  28. Cone M.R.11,
  29. Hogan K.N.11,
  30. Kopp E.W.11,
  31. Anzinger J.J.12,
  32. Garcia K.F.13,
  33. Parham L.A.13,
  34. Gélvez Ramírez R.M.14,
  35. Miranda Montoya M.C.14,
  36. Rojas D.P.15,
  37. Brown C.M.16,
  38. Hennigan S.16,
  39. Sabina B.16,
  40. Scotland S.16,
  41. Gangavarapu K.17,
  42. Grubaugh N.D.17,
  43. Oliveira G.18,
  44. Robles-Sikisaka R.17,
  45. Rambaut A.19,20,
  46. Gehrke L.21,22,
  47. Smole S.16,
  48. Halloran M.E.23,24,
  49. Villar Centeno L.A.14,
  50. Mattar S.25,
  51. Lorenzana I.13,
  52. Cerbino-Neto J.7,
  53. Valim C.4,26,
  54. Degrave W.27,
  55. Bozza P.T.28,
  56. Gnirke A.1,
  57. Andersen K.G.17,18,29,†,
  58. Isern S.†,9,
  59. Michael S.F.†,9,
  60. Bozza F.A.†,7,30,
  61. Souza T.M.L.†,,31,32,
  62. Bosch I.†,21,22,
  63. Yozwiak N.L.†,1,3,
  64. MacInnis B.L.†,1,4, and
  65. Sabeti P.C.†,1,3,4
  1. 1Broad Institute of MIT and Harvard, Cambridge MA, USA
  2. 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge MA, USA
  3. 3Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge MA, USA
  4. 4Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Harvard University, Boston MA, USA
  5. 5Harvard-MIT Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge MA, USA
  6. 6Harvard University Extension School, Cambridge, MA, USA
  7. 7National Institute of Infectious Diseases Evandro Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro RJ, Brazil
  8. 8Laboratório de AIDS e Imunologia Molecular, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro RJ, Brazil
  9. 9Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers FL, USA
  10. 10Miami-Dade County Mosquito Control, Miami FL, USA
  11. 11Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa FL, USA
  12. 12Department of Microbiology, The University of the West Indies, Mona, Kingston, Jamaica
  13. 13Instituto de Investigacion en Microbiologia, Universidad Nacional Autónoma de Honduras, Honduras
  14. 14Grupo de Epidemiología Clínica, Universidad Industrial de Santander, Bucaramanga, Colombia
  15. 15Department of Epidemiology, College of Public Health and Health Professions, University of Florida, Gainesville FL, USA
  16. 16Massachusetts Department of Public Health, Jamaica Plain MA, USA
  17. 17Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla CA, USA
  18. 18Scripps Translational Science Institute, La Jolla CA, USA
  19. 19University of Edinburgh, Edinburgh, UK
  20. 20Fogarty International Center, National Institutes of Health, Bethesda MD, USA
  21. 21Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge MA, USA
  22. 22Department of Microbiology and Immunobiology, Harvard Medical School, Boston MA, USA
  23. 23Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle WA, USA
  24. 24Department of Biostatistics, University of Washington, Seattle WA, USA
  25. 25Institute for Tropical Biology Research, Universidad de Córdoba, Colombia
  26. 26Department of Osteopathic Medical Specialties, Michigan State University, East Lansing, MI, USA
  27. 27Fiocruz, Instituto Oswaldo Cruz, Laboratório de Genômica Funcional e Bioinformática, Rio de Janeiro RJ, Brazil
  28. 28Laboratório de Imunofarmacologia, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro RJ, Brazil
  29. 29Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla CA, USA
  30. 30D'Or Institute for Research and Education, Brazil
  31. 31National Institute for Science and Technology on Innovation on Neglected Diseases, Fiocruz, Rio de Janeiro RJ, Brazil
  32. 32Center for Technological Development in Health, Fiocruz, Rio de Janeiro RJ, Brazil
  1. ↵co-corresponding author: B.L.M. (bronwyn{at}broadinstitute.org); T.M.L.S. (tmoreno{at}cdts.fiocruz.br)
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Posted April 23, 2017.
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Genome sequencing reveals Zika virus diversity and spread in the Americas
Metsky H.C., Matranga C.B., Wohl S., Schaffner S.F., Freije C.A., Winnicki S.M., West K., Qu J., Baniecki M.L., Gladden-Young A., Lin A.E., Tomkins-Tinch C.H., Ye S.H., Park D.J., Luo C.Y., Barnes K.G., Shah R.R., Chak B., Barbosa-Lima G., Delatorre E., Vieira Y.R., Paul L.M., Tan A.L., Barcellona C.M., Porcelli M.C., Vasquez C., Cannons A.C., Cone M.R., Hogan K.N., Kopp E.W., Anzinger J.J., Garcia K.F., Parham L.A., Gélvez Ramírez R.M., Miranda Montoya M.C., Rojas D.P., Brown C.M., Hennigan S., Sabina B., Scotland S., Gangavarapu K., Grubaugh N.D., Oliveira G., Robles-Sikisaka R., Rambaut A., Gehrke L., Smole S., Halloran M.E., Villar Centeno L.A., Mattar S., Lorenzana I., Cerbino-Neto J., Valim C., Degrave W., Bozza P.T., Gnirke A., Andersen K.G., Isern S., Michael S.F., Bozza F.A., Souza T.M.L., Bosch I., Yozwiak N.L., MacInnis B.L., Sabeti P.C.
bioRxiv 109348; doi: https://doi.org/10.1101/109348
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