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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Daniel L Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, View ORCID ProfileAlexander Dobrovic, View ORCID ProfileTerence P Speed, View ORCID ProfileAnthony T Papenfuss
doi: https://doi.org/10.1101/110387
Daniel L Cameron
1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia
2Department of Medical Biology, University of Melbourne, Parkville, Victoria, 3010, Australia
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Jan Schroeder
1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia
2Department of Medical Biology, University of Melbourne, Parkville, Victoria, 3010, Australia
3Department of Computing and Information Systems, The University of Melbourne, Melbourne, Australia
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Jocelyn Sietsma Penington
1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia
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Hongdo Do
4Translational Genomics and Epigenomics Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, Victoria, 3084, Australia
5Department of Pathology, University of Melbourne, Parkville, Victoria, 3010, Australia
6School of Cancer Medicine, La Trobe University, Bundoora, Victoria, 3084, Australia
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Ramyar Molania
4Translational Genomics and Epigenomics Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, Victoria, 3084, Australia
7Department of Medicine, University of Melbourne, Austin Health, Heidelberg, Victoria, 3084, Australia
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Alexander Dobrovic
4Translational Genomics and Epigenomics Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, Victoria, 3084, Australia
5Department of Pathology, University of Melbourne, Parkville, Victoria, 3010, Australia
6School of Cancer Medicine, La Trobe University, Bundoora, Victoria, 3084, Australia
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  • ORCID record for Alexander Dobrovic
Terence P Speed
1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia
8Department of Mathematics and Statistics, University of Melbourne, VIC 3010, Australia
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Anthony T Papenfuss
1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia
2Department of Medical Biology, University of Melbourne, Parkville, Victoria, 3010, Australia
8Department of Mathematics and Statistics, University of Melbourne, VIC 3010, Australia
9Peter MacCallum Cancer Centre, Victorian Comprehensive Cancer Centre, Melbourne, 3000, Australia
10Sir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, Victoria, 3010, Australia
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  • ORCID record for Anthony T Papenfuss
  • For correspondence: papenfuss@wehi.edu.au
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Posted February 21, 2017.
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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
Daniel L Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, Alexander Dobrovic, Terence P Speed, Anthony T Papenfuss
bioRxiv 110387; doi: https://doi.org/10.1101/110387
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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
Daniel L Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, Alexander Dobrovic, Terence P Speed, Anthony T Papenfuss
bioRxiv 110387; doi: https://doi.org/10.1101/110387

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