GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Daniel L Cameron; Jan Schroeder; Jocelyn Sietsma Penington; Hongdo Do; Ramyar Molania; Alexander Dobrovic; Terence P Speed; Anthony T Papenfuss

doi:10.1101/110387

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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Daniel L Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, View ORCID ProfileAlexander Dobrovic, View ORCID ProfileTerence P Speed, View ORCID ProfileAnthony T Papenfuss

doi: https://doi.org/10.1101/110387

Daniel L Cameron

1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia

2Department of Medical Biology, University of Melbourne, Parkville, Victoria, 3010, Australia

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Jan Schroeder

1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia

2Department of Medical Biology, University of Melbourne, Parkville, Victoria, 3010, Australia

3Department of Computing and Information Systems, The University of Melbourne, Melbourne, Australia

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Jocelyn Sietsma Penington

1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia

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Hongdo Do

4Translational Genomics and Epigenomics Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, Victoria, 3084, Australia

5Department of Pathology, University of Melbourne, Parkville, Victoria, 3010, Australia

6School of Cancer Medicine, La Trobe University, Bundoora, Victoria, 3084, Australia

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Ramyar Molania

4Translational Genomics and Epigenomics Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, Victoria, 3084, Australia

7Department of Medicine, University of Melbourne, Austin Health, Heidelberg, Victoria, 3084, Australia

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Alexander Dobrovic

4Translational Genomics and Epigenomics Laboratory, Olivia Newton-John Cancer Research Institute, Heidelberg, Victoria, 3084, Australia

5Department of Pathology, University of Melbourne, Parkville, Victoria, 3010, Australia

6School of Cancer Medicine, La Trobe University, Bundoora, Victoria, 3084, Australia

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ORCID record for Alexander Dobrovic

Terence P Speed

1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia

8Department of Mathematics and Statistics, University of Melbourne, VIC 3010, Australia

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ORCID record for Terence P Speed

Anthony T Papenfuss

1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia

2Department of Medical Biology, University of Melbourne, Parkville, Victoria, 3010, Australia

8Department of Mathematics and Statistics, University of Melbourne, VIC 3010, Australia

9Peter MacCallum Cancer Centre, Victorian Comprehensive Cancer Centre, Melbourne, 3000, Australia

10Sir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, Victoria, 3010, Australia

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ORCID record for Anthony T Papenfuss
For correspondence: papenfuss@wehi.edu.au

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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Daniel L Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, Alexander Dobrovic, Terence P Speed, Anthony T Papenfuss

bioRxiv 110387; doi: https://doi.org/10.1101/110387

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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Daniel L Cameron, Jan Schroeder, Jocelyn Sietsma Penington, Hongdo Do, Ramyar Molania, Alexander Dobrovic, Terence P Speed, Anthony T Papenfuss

bioRxiv 110387; doi: https://doi.org/10.1101/110387

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