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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

View ORCID ProfileJulie A McMurry, View ORCID ProfileNick Juty, View ORCID ProfileNiklas Blomberg, View ORCID ProfileTony Burdett, View ORCID ProfileTom Conlin, View ORCID ProfileNathalie Conte, View ORCID ProfileMélanie Courtot, View ORCID ProfileJohn Deck, View ORCID ProfileMichel Dumontier, View ORCID ProfileDonal K Fellows, View ORCID ProfileAlejandra Gonzalez-Beltran, View ORCID ProfilePhilipp Gormanns, View ORCID ProfileJeffrey Grethe, View ORCID ProfileJanna Hastings, View ORCID ProfileHenning Hermjakob, View ORCID ProfileJean-Karim Hériché, View ORCID ProfileJon C Ison, View ORCID ProfileRafael C Jimenez, View ORCID ProfileSimon Jupp, View ORCID ProfileJohn Kunze, View ORCID ProfileCamille Laibe, View ORCID ProfileNicolas Le Novère, View ORCID ProfileJames Malone, View ORCID ProfileMaria Jesus Martin, View ORCID ProfileJohanna R McEntyre, View ORCID ProfileChris Morris, View ORCID ProfileJuha Muilu, View ORCID ProfileWolfgang Müller, View ORCID ProfilePhilippe Rocca-Serra, View ORCID ProfileSusanna-Assunta Sansone, View ORCID ProfileMurat Sariyar, View ORCID ProfileJacky L Snoep, View ORCID ProfileNatalie J Stanford, View ORCID ProfileStian Soiland-Reyes, View ORCID ProfileNeil Swainston, View ORCID ProfileNicole Washington, View ORCID ProfileAlan R Williams, View ORCID ProfileSarala Wimalaratne, View ORCID ProfileLilly Winfree, View ORCID ProfileKatherine Wolstencroft, View ORCID ProfileCarole Goble, View ORCID ProfileChristopher J Mungall, View ORCID ProfileMelissa A Haendel, View ORCID ProfileHelen Parkinson
doi: https://doi.org/10.1101/117812
Julie A McMurry
1Department of Medical Informatics and Epidemiology and OHSU Library, Oregon Health & Science University, Portland, USA
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Nick Juty
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Niklas Blomberg
4ELIXIR Hub, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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  • ORCID record for Niklas Blomberg
Tony Burdett
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Tom Conlin
1Department of Medical Informatics and Epidemiology and OHSU Library, Oregon Health & Science University, Portland, USA
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Nathalie Conte
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Mélanie Courtot
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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John Deck
3Berkeley Natural History Museums, University of California at Berkeley
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Michel Dumontier
5Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA
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Donal K Fellows
6School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Alejandra Gonzalez-Beltran
7Oxford e-Research Centre, University of Oxford, Oxford, United Kingdom
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Philipp Gormanns
8Institute of Experimental Genetics, Helmholtz Centre Munich-German Research Center for Environmental Health (GmbH), Neuherberg, Germany
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Jeffrey Grethe
9Center for Research in Biological Systems, University of California San Diego, La Jolla, California, USA
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Janna Hastings
13Babraham Institute, Cambridge, United Kingdom
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Henning Hermjakob
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Jean-Karim Hériché
10European Molecular Biology Laboratory, Heidelberg, Germany
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Jon C Ison
11Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
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Rafael C Jimenez
4ELIXIR Hub, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Simon Jupp
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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John Kunze
12California Digital Library (CDL)
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Camille Laibe
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Nicolas Le Novère
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
13Babraham Institute, Cambridge, United Kingdom
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James Malone
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Maria Jesus Martin
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Johanna R McEntyre
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Chris Morris
14STFC, Daresbury Laboratory, Warrington, United Kingdom
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Juha Muilu
15Genomics Coordination Ctr, Dept of Genetics, University Medical Center Groningen and Groningen Bioinformatics Center, U of Groningen, Netherlands
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Wolfgang Müller
16SDBV, HITS, Heidelberg, Germany
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Philippe Rocca-Serra
7Oxford e-Research Centre, University of Oxford, Oxford, United Kingdom
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Susanna-Assunta Sansone
7Oxford e-Research Centre, University of Oxford, Oxford, United Kingdom
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Murat Sariyar
18Institute of Pathology, Charite - University Medicine Berlin, Berlin, Germany
19TMF - Technologie-und Methodenplattform e. V. Berlin, Germany
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Jacky L Snoep
20MIB, University of Manchester, Manchester, UK
21Department of Biochemistry, Stellenbosch University, Stellenbosch, South Africa
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Natalie J Stanford
6School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Stian Soiland-Reyes
6School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Neil Swainston
22Manchester Centre for Synthetic Biology of Fine and Speciality Chemicals (SYNBIOCHEM), University of Manchester, Manchester, UK
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Nicole Washington
17Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
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Alan R Williams
6School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Sarala Wimalaratne
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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Lilly Winfree
1Department of Medical Informatics and Epidemiology and OHSU Library, Oregon Health & Science University, Portland, USA
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Katherine Wolstencroft
23Leiden Institute of Advanced Computer Science, Leiden University, Leiden, Netherlands
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Carole Goble
6School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Christopher J Mungall
17Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
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Melissa A Haendel
1Department of Medical Informatics and Epidemiology and OHSU Library, Oregon Health & Science University, Portland, USA
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  • ORCID record for Melissa A Haendel
Helen Parkinson
2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
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  • ORCID record for Helen Parkinson
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Article Information

doi 
https://doi.org/10.1101/117812
History 
  • March 20, 2017.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.

Author Information

  1. Julie A McMurry1,
  2. Nick Juty2,
  3. Niklas Blomberg4,
  4. Tony Burdett2,
  5. Tom Conlin1,
  6. Nathalie Conte2,
  7. Mélanie Courtot2,
  8. John Deck3,
  9. Michel Dumontier5,
  10. Donal K Fellows6,
  11. Alejandra Gonzalez-Beltran7,
  12. Philipp Gormanns8,
  13. Jeffrey Grethe9,
  14. Janna Hastings13,
  15. Henning Hermjakob2,
  16. Jean-Karim Hériché10,
  17. Jon C Ison11,
  18. Rafael C Jimenez4,
  19. Simon Jupp2,
  20. John Kunze12,
  21. Camille Laibe2,
  22. Nicolas Le Novère2,13,
  23. James Malone2,
  24. Maria Jesus Martin2,
  25. Johanna R McEntyre2,
  26. Chris Morris14,
  27. Juha Muilu15,
  28. Wolfgang Müller16,
  29. Philippe Rocca-Serra7,
  30. Susanna-Assunta Sansone7,
  31. Murat Sariyar18,19,
  32. Jacky L Snoep20,21,
  33. Natalie J Stanford6,
  34. Stian Soiland-Reyes6,
  35. Neil Swainston22,
  36. Nicole Washington17,
  37. Alan R Williams6,
  38. Sarala Wimalaratne2,
  39. Lilly Winfree1,
  40. Katherine Wolstencroft23,
  41. Carole Goble6,
  42. Christopher J Mungall17,
  43. Melissa A Haendel1 and
  44. Helen Parkinson2
  1. 1Department of Medical Informatics and Epidemiology and OHSU Library, Oregon Health & Science University, Portland, USA
  2. 2European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
  3. 3Berkeley Natural History Museums, University of California at Berkeley
  4. 4ELIXIR Hub, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
  5. 5Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA
  6. 6School of Computer Science, The University of Manchester, Manchester, United Kingdom
  7. 7Oxford e-Research Centre, University of Oxford, Oxford, United Kingdom
  8. 8Institute of Experimental Genetics, Helmholtz Centre Munich-German Research Center for Environmental Health (GmbH), Neuherberg, Germany
  9. 9Center for Research in Biological Systems, University of California San Diego, La Jolla, California, USA
  10. 10European Molecular Biology Laboratory, Heidelberg, Germany
  11. 11Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
  12. 12California Digital Library (CDL)
  13. 13Babraham Institute, Cambridge, United Kingdom
  14. 14STFC, Daresbury Laboratory, Warrington, United Kingdom
  15. 15Genomics Coordination Ctr, Dept of Genetics, University Medical Center Groningen and Groningen Bioinformatics Center, U of Groningen, Netherlands
  16. 16SDBV, HITS, Heidelberg, Germany
  17. 17Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
  18. 18Institute of Pathology, Charite - University Medicine Berlin, Berlin, Germany
  19. 19TMF - Technologie-und Methodenplattform e. V. Berlin, Germany
  20. 20MIB, University of Manchester, Manchester, UK
  21. 21Department of Biochemistry, Stellenbosch University, Stellenbosch, South Africa
  22. 22Manchester Centre for Synthetic Biology of Fine and Speciality Chemicals (SYNBIOCHEM), University of Manchester, Manchester, UK
  23. 23Leiden Institute of Advanced Computer Science, Leiden University, Leiden, Netherlands
  24. 24Center for Research in Biological Systems, University of California San Diego, La Jolla, California, USA
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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
Julie A McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte, Mélanie Courtot, John Deck, Michel Dumontier, Donal K Fellows, Alejandra Gonzalez-Beltran, Philipp Gormanns, Jeffrey Grethe, Janna Hastings, Henning Hermjakob, Jean-Karim Hériché, Jon C Ison, Rafael C Jimenez, Simon Jupp, John Kunze, Camille Laibe, Nicolas Le Novère, James Malone, Maria Jesus Martin, Johanna R McEntyre, Chris Morris, Juha Muilu, Wolfgang Müller, Philippe Rocca-Serra, Susanna-Assunta Sansone, Murat Sariyar, Jacky L Snoep, Natalie J Stanford, Stian Soiland-Reyes, Neil Swainston, Nicole Washington, Alan R Williams, Sarala Wimalaratne, Lilly Winfree, Katherine Wolstencroft, Carole Goble, Christopher J Mungall, Melissa A Haendel, Helen Parkinson
bioRxiv 117812; doi: https://doi.org/10.1101/117812
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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
Julie A McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte, Mélanie Courtot, John Deck, Michel Dumontier, Donal K Fellows, Alejandra Gonzalez-Beltran, Philipp Gormanns, Jeffrey Grethe, Janna Hastings, Henning Hermjakob, Jean-Karim Hériché, Jon C Ison, Rafael C Jimenez, Simon Jupp, John Kunze, Camille Laibe, Nicolas Le Novère, James Malone, Maria Jesus Martin, Johanna R McEntyre, Chris Morris, Juha Muilu, Wolfgang Müller, Philippe Rocca-Serra, Susanna-Assunta Sansone, Murat Sariyar, Jacky L Snoep, Natalie J Stanford, Stian Soiland-Reyes, Neil Swainston, Nicole Washington, Alan R Williams, Sarala Wimalaratne, Lilly Winfree, Katherine Wolstencroft, Carole Goble, Christopher J Mungall, Melissa A Haendel, Helen Parkinson
bioRxiv 117812; doi: https://doi.org/10.1101/117812

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