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A multicenter, randomized study of decitabine as epigenetic priming with induction chemotherapy in children with AML

Lia Gore, Timothy J. Triche Jr., Jason E. Farrar, Daniel Wai, Christophe Legendre, Gerald C Gooden, Winnie S. Liang, John Carpten, David Lee, Frank Alvaro, Margaret E. Macy, Carola Arndt, Philip Barnette, Todd Cooper, Laura Martin, Aru Narendran, Jessica Pollard, Soheil Meshinchi, Jessica Boklan, Robert J Arceci, Bodour Salhia
doi: https://doi.org/10.1101/124263
Lia Gore
1Children’s Hospital Colorado and University of Colorado School of Medicine, Aurora CO
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Timothy J. Triche Jr.
2Jane Anne Nohl Division of Hematology, Keck Medicine of USC and Norris Comprehensive Cancer Center, Los Angeles, CA
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Jason E. Farrar
3Arkansas Children’s Research Institute and University of Arkansas for Medical Sciences, Little Rock, AR
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Daniel Wai
4Ron Matricaria Institute of Molecular Medicine, Phoenix, AZ
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Christophe Legendre
5Translational Genomics Research Institute, Phoenix, AZ
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Gerald C Gooden
2Jane Anne Nohl Division of Hematology, Keck Medicine of USC and Norris Comprehensive Cancer Center, Los Angeles, CA
5Translational Genomics Research Institute, Phoenix, AZ
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Winnie S. Liang
5Translational Genomics Research Institute, Phoenix, AZ
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John Carpten
5Translational Genomics Research Institute, Phoenix, AZ
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David Lee
6Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins’ University, Baltimore MD
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Frank Alvaro
7John Hunter Hospital, New South Wales, Australia
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Margaret E. Macy
1Children’s Hospital Colorado and University of Colorado School of Medicine, Aurora CO
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Carola Arndt
8Mayo Clinic, Rochester MN
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Philip Barnette
9Primary Children’s Medical Center and the University of Utah, Salt Lake City UT
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Todd Cooper
10Children’s Healthcare of Atlanta, Atlanta GA
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Laura Martin
11Nationwide Children’s Hospital, Columbus OH
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Aru Narendran
12Alberta Children’s Hospital and University of Calgary, Calgary, AB, Canada
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Jessica Pollard
13Seattle Children’s Hospital
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Soheil Meshinchi
14Seattle, WA and Fred Hutchinson Cancer Research Center
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Jessica Boklan
15Seattle WA; Phoenix Children’s Hospital, Phoenix, AZ
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Robert J Arceci
4Ron Matricaria Institute of Molecular Medicine, Phoenix, AZ
6Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins’ University, Baltimore MD
15Seattle WA; Phoenix Children’s Hospital, Phoenix, AZ
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Bodour Salhia
2Jane Anne Nohl Division of Hematology, Keck Medicine of USC and Norris Comprehensive Cancer Center, Los Angeles, CA
5Translational Genomics Research Institute, Phoenix, AZ
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ABSTRACT

Background Decitabine is a deoxycytidine nucleoside derivative inhibitor of DNA-methyltransferases, which has been studied extensively and is approved for myelodysplastic syndrome in adults but with less focus in children. Accordingly, we conducted a phase 1 multicenter, randomized, open-label study to evaluate decitabine pre-treatment before standard induction therapy in children with newly diagnosed AML to assess safety and tolerability and explore a number of biologic endpoints.

Results Twenty-four patients were fully assessable for all study objectives per protocol (10 in Arm A, 14 in Arm B). All patients experienced neutropenia and thrombocytopenia. The most common grade 3 and 4 non-hematologic adverse events observed were gastrointestinal toxicities and hypophosphatemia. Plasma decitabine PK were similar to previously reported adult data. Overall CR/CRi was similar for the two arms. MRD negativity at end-induction was 85% in Arm A versus 67% in Arm B patients. DNA methylation measured in peripheral blood over the course of treatment tracked with blast clearance and matched marrow aspirates at day 0 and day 21. Unlike end-point marrow analyses, promoter methylation in blood identified an apparent reversal of response in the lone treatment failure, one week prior to the patient’s marrow aspirate confirming non-response. Decitabine-induced effects of end-induction marrows in Arm A were reflected by changes in DNA methylation and gene expression comparison with matched paired marrow diagnostic aspirates.

Conclusions This first-in-pediatrics trial demonstrates that decitabine prior to standard combination chemotherapy is feasible and well tolerated in children with newly diagnosed AML. Pre-treatment with decitabine may represent a newer therapeutic option for pediatric AML, especially as it appears to induce important epigenetic alterations. The novel biological correlates studied in this trial offer a clinically relevant window into disease progression and remission. Additional studies are needed to definitively assess whether decitabine can enhance durability responses in children with AML. This trial was registered at www.clinicaltrials.gov as NCT01177540.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted June 14, 2017.
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A multicenter, randomized study of decitabine as epigenetic priming with induction chemotherapy in children with AML
Lia Gore, Timothy J. Triche Jr., Jason E. Farrar, Daniel Wai, Christophe Legendre, Gerald C Gooden, Winnie S. Liang, John Carpten, David Lee, Frank Alvaro, Margaret E. Macy, Carola Arndt, Philip Barnette, Todd Cooper, Laura Martin, Aru Narendran, Jessica Pollard, Soheil Meshinchi, Jessica Boklan, Robert J Arceci, Bodour Salhia
bioRxiv 124263; doi: https://doi.org/10.1101/124263
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A multicenter, randomized study of decitabine as epigenetic priming with induction chemotherapy in children with AML
Lia Gore, Timothy J. Triche Jr., Jason E. Farrar, Daniel Wai, Christophe Legendre, Gerald C Gooden, Winnie S. Liang, John Carpten, David Lee, Frank Alvaro, Margaret E. Macy, Carola Arndt, Philip Barnette, Todd Cooper, Laura Martin, Aru Narendran, Jessica Pollard, Soheil Meshinchi, Jessica Boklan, Robert J Arceci, Bodour Salhia
bioRxiv 124263; doi: https://doi.org/10.1101/124263

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