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Cycledash: a web application for the interactive analysis and exploration of variants

View ORCID ProfileIsaac Hodes, View ORCID ProfileDan Vanderkam, View ORCID ProfileTavi Nathanson, View ORCID ProfileB. Arman Aksoy, Jaclyn Perrone, View ORCID ProfileJeff Hammerbacher
doi: https://doi.org/10.1101/125153
Isaac Hodes
1Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences, Address New York, NY 10029.
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Dan Vanderkam
1Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences, Address New York, NY 10029.
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Tavi Nathanson
1Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences, Address New York, NY 10029.
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B. Arman Aksoy
1Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences, Address New York, NY 10029.
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Jaclyn Perrone
1Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences, Address New York, NY 10029.
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Jeff Hammerbacher
1Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences, Address New York, NY 10029.
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Abstract

As genomics begins to influence clinical care, validating the result of a somatic variant calling pipeline has become increasingly important. Cycledash is a web application which facilitates the validation and analysis of somatic variants, bringing together and streamlining existing tools and workflows for examining and verifying the existence of variants in patient samples.

Availability The source code is freely available at https://github.com/hammerlab/cycledash under the Apache 2 License. A public demo (username cycledash password cycledash123) is available at http://cycledash.hammerlab.org. The web application is tested to work in recent version of Firefox, Safari, and Chrome, and the server applications will run on Linux and OS X systems.

Contact correspondence{at}hammerlab.org

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted April 06, 2017.
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Cycledash: a web application for the interactive analysis and exploration of variants
Isaac Hodes, Dan Vanderkam, Tavi Nathanson, B. Arman Aksoy, Jaclyn Perrone, Jeff Hammerbacher
bioRxiv 125153; doi: https://doi.org/10.1101/125153
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Cycledash: a web application for the interactive analysis and exploration of variants
Isaac Hodes, Dan Vanderkam, Tavi Nathanson, B. Arman Aksoy, Jaclyn Perrone, Jeff Hammerbacher
bioRxiv 125153; doi: https://doi.org/10.1101/125153

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