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Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in the surface ocean

Tom O. Delmont, Christopher Quince, Alon Shaiber, Özcan C. Esen, Sonny TM Lee, Sebastian Lücker, A. Murat Eren
doi: https://doi.org/10.1101/129791
Tom O. Delmont
1The Department of Medicine, The University of Chicago, Chicago, 60637 IL, USA
2Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, 02543 MA, USA
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Christopher Quince
3Warwick Medical School, University of Warwick, NA, CV4 7AL Coventry United Kingdom
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Alon Shaiber
1The Department of Medicine, The University of Chicago, Chicago, 60637 IL, USA
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Özcan C. Esen
1The Department of Medicine, The University of Chicago, Chicago, 60637 IL, USA
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Sonny TM Lee
1The Department of Medicine, The University of Chicago, Chicago, 60637 IL, USA
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Sebastian Lücker
4Department of Microbiology, Radboud University, NA, 6525 AJ Nijmegen, the Netherlands
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A. Murat Eren
1The Department of Medicine, The University of Chicago, Chicago, 60637 IL, USA
2Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, 02543 MA, USA
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  • For correspondence: meren@uchicago.edu
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Abstract

Nitrogen fixation in the surface ocean impacts the global climate by regulating the microbial primary productivity and the sequestration of carbon through the biological pump. Cyanobacterial populations have long been thought to represent the main suppliers of the bio-available nitrogen in this habitat. However, recent molecular surveys of nitrogenase reductase gene revealed the existence of rare non-cyanobacterial populations that can also fix nitrogen. Here, we characterize for the first time the genomic content of some of these heterotrophic bacterial diazotrophs (HBDs) inhabiting the open surface ocean waters. They represent new lineages within Planctomycetes and Proteobacteria, a phylum never linked to nitrogen fixation prior to this study. HBDs were surprisingly abundant in the Pacific Ocean and the Atlantic Ocean northwest, conflicting with decades of PCR surveys. The abundance and widespread occurrence of non-cyanobacterial diazotrophs in the surface ocean emphasizes the need to re-evaluate their role in the nitrogen cycle and primary productivity.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted April 23, 2017.
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Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in the surface ocean
Tom O. Delmont, Christopher Quince, Alon Shaiber, Özcan C. Esen, Sonny TM Lee, Sebastian Lücker, A. Murat Eren
bioRxiv 129791; doi: https://doi.org/10.1101/129791
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Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in the surface ocean
Tom O. Delmont, Christopher Quince, Alon Shaiber, Özcan C. Esen, Sonny TM Lee, Sebastian Lücker, A. Murat Eren
bioRxiv 129791; doi: https://doi.org/10.1101/129791

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