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Viral apoptosis evasion via the MAPK pathway by use of a host long noncoding RNA

Samantha Barichievy, Jerolen Naidoo, Mikaël Boullé, Janine Scholefield, Suraj P. Parihar, Anna K. Coussens, Frank Brombacher, Alex Sigal, Musa M. Mhlanga
doi: https://doi.org/10.1101/153130
Samantha Barichievy
1 Gene Expression & Biophysics Group, CSIR Synthetic Biology ERA, Pretoria, 0001, South Africa.
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Jerolen Naidoo
1 Gene Expression & Biophysics Group, CSIR Synthetic Biology ERA, Pretoria, 0001, South Africa.
2 Institute of Infectious Diseases & Molecular Medicine (IDM), Division of Chemical Systems & Synthetic Biology, University of Cape Town, Cape Town, 7925, South Africa.
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Mikaël Boullé
3 KwaZulu-Natal Research Institute for TB-HIV (K-RITH), Durban, 4001, South Africa.
4 University of KwaZulu-Natal, Durban, 4041, South Africa.
5 Max Planck Institute for Infection Biology, Berlin, 10117, Germany.
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Janine Scholefield
1 Gene Expression & Biophysics Group, CSIR Synthetic Biology ERA, Pretoria, 0001, South Africa.
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Suraj P. Parihar
6 Institute of Infectious Diseases & Molecular Medicine (IDM), Division of Immunology & South African Medical Research Council (SAMRC) Immunology of Infectious Diseases, Faculty of Health Sciences, University of Cape Town, Cape Town, 7925, South Africa.
7 International Centre for Genetic Engineering & Biotechnology (ICGEB), Cape Town, 7925, South Africa.
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Anna K. Coussens
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Frank Brombacher
6 Institute of Infectious Diseases & Molecular Medicine (IDM), Division of Immunology & South African Medical Research Council (SAMRC) Immunology of Infectious Diseases, Faculty of Health Sciences, University of Cape Town, Cape Town, 7925, South Africa.
7 International Centre for Genetic Engineering & Biotechnology (ICGEB), Cape Town, 7925, South Africa.
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Alex Sigal
3 KwaZulu-Natal Research Institute for TB-HIV (K-RITH), Durban, 4001, South Africa.
4 University of KwaZulu-Natal, Durban, 4041, South Africa.
5 Max Planck Institute for Infection Biology, Berlin, 10117, Germany.
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Musa M. Mhlanga
1 Gene Expression & Biophysics Group, CSIR Synthetic Biology ERA, Pretoria, 0001, South Africa.
2 Institute of Infectious Diseases & Molecular Medicine (IDM), Division of Chemical Systems & Synthetic Biology, University of Cape Town, Cape Town, 7925, South Africa.
9 Gene Expression and Biophysics Unit, Instituto de Medicina Molecular, Faculdade de Medicina Universidade de Lisboa, Lisbon, 1649-028, Portugal.
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  • For correspondence: obiwan@mhlangalab.org
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SUMMARY

An emerging realisation of infectious disease is the high incidence of genetic instability resulting from pathogen-induced DNA lesions, often leading to classical hallmarks of cancer such as evasion of apoptosis. The Human Immunodeficiency Virus type 1 (HIV-1) induces apoptosis in CD4+ T cells but is largely non-cytopathic in macrophages, thereby leading to long-term dissemination of the pathogen specifically by these host cells. Apoptosis is triggered by double-strand breaks (DSBs), such as those induced by integrating retroviruses, and is coordinated by the p53-regulated long noncoding RNA lincRNA-p21, in a complex with its protein binding partners HuR and hnRNP-K. Here, we monitor the cellular response to infection to determine how HIV-1 induces DSBs in macrophages yet evades apoptosis in these cells. We show that the virus does so by securing the pro-survival MAP2K1/ERK2 cascade early upon entry, in a gp120-dependent manner, to orchestrate a complex dysregulation of lincRNA-p21. By sequestering HuR in the nucleus, HIV-1 enables lincRNA-p21 degradation. Simultaneously, the virus permits transcription of pro-survival genes by sequestering hnRNP-K in the cytoplasm via the MAP2K1/ERK2 pathway. Notably, this pro-survival cascade is unavailable for similar viral manipulation in CD4+ T cells. The introduction of MAP2K1, ERK2 or HDM2 inhibitors in HIV-infected macrophages results in apoptosis providing strong evidence that the viral-mediated apoptotic block can be released, specifically by restoring the nuclear interaction of lincRNA-p21 and hnRNP-K. These results reveal pathogenic control of apoptosis and DNA damage via a host long noncoding RNA, and present MAP2K1/ERK2 inhibitors as a novel therapeutic intervention strategy for HIV-1 infection in macrophages.

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Posted June 21, 2017.
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Viral apoptosis evasion via the MAPK pathway by use of a host long noncoding RNA
Samantha Barichievy, Jerolen Naidoo, Mikaël Boullé, Janine Scholefield, Suraj P. Parihar, Anna K. Coussens, Frank Brombacher, Alex Sigal, Musa M. Mhlanga
bioRxiv 153130; doi: https://doi.org/10.1101/153130
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Viral apoptosis evasion via the MAPK pathway by use of a host long noncoding RNA
Samantha Barichievy, Jerolen Naidoo, Mikaël Boullé, Janine Scholefield, Suraj P. Parihar, Anna K. Coussens, Frank Brombacher, Alex Sigal, Musa M. Mhlanga
bioRxiv 153130; doi: https://doi.org/10.1101/153130

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