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Diffusion as a ruler: modeling kinesin diffusion as a length sensor for intraflagellar transport

Nathan L. Hendel, Matt Thomson, Wallace F. Marshall
doi: https://doi.org/10.1101/156760
Nathan L. Hendel
1Department of Biochemistry and Biophysics, University of California, San Francisco, CA, 94158, USA
2Integrative Program in Quantitative Biology, University of California, San Francisco, CA, 94158, USA
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Matt Thomson
3Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA
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Wallace F. Marshall
1Department of Biochemistry and Biophysics, University of California, San Francisco, CA, 94158, USA
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  • For correspondence: [email protected]
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ABSTRACT

An important question in cell biology is whether cells are able to measure size, either whole cell size or organelle size. Perhaps cells have an internal chemical representation of size that can be used to precisely regulate growth, or perhaps size is just an accident that emerges due to constraint of nutrients. The eukaryotic flagellum is an ideal model for studying size sensing and control because its linear geometry makes it essentially one-dimensional, greatly simplifying mathematical modeling. The assembly of flagella is regulated by intraflagellar transport (IFT), in which kinesin motors carry cargo adaptors for flagellar proteins along the flagellum and then deposit them at the tip, lengthening the flagellum. The rate at which IFT motors are recruited to begin transport into the flagellum is anticorrelated with the flagellar length, implying some kind of communication between the base and the tip and possibly indicating that cells contain some mechanism for measuring flagellar length. Although it is possible to imagine many complex scenarios in which additional signaling molecules sense length and carry feedback signals to the cell body to control IFT, might the already-known components of the IFT system be sufficient to allow length dependence of IFT? Here, we investigate a model in which the anterograde kinesin motors unbind after cargo delivery, diffuse back to the base, and are subsequently reused to power entry of new IFT trains into the flagellum. By modeling such a system at three different levels of abstraction we are able to show that the diffusion time of the motors can in principle be sufficient to serve as a proxy for length measurement. In all three implementations, we found that the diffusion model can not only achieve a stable steady-state length without the addition of any other signaling molecules or pathways, but also is able to produce the anticorrelation between length and IFT recruitment rate that has been observed in quantitative imaging studies.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted June 28, 2017.
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Diffusion as a ruler: modeling kinesin diffusion as a length sensor for intraflagellar transport
Nathan L. Hendel, Matt Thomson, Wallace F. Marshall
bioRxiv 156760; doi: https://doi.org/10.1101/156760
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Diffusion as a ruler: modeling kinesin diffusion as a length sensor for intraflagellar transport
Nathan L. Hendel, Matt Thomson, Wallace F. Marshall
bioRxiv 156760; doi: https://doi.org/10.1101/156760

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