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ukbtools: An R package to manage and query UK Biobank data

View ORCID ProfileKen B. Hanscombe, Jonathan R.I Coleman, Matthew Traylor, Cathryn M. Lewis
doi: https://doi.org/10.1101/158113
Ken B. Hanscombe
1Department of Medical & Molecular Genetics, King’s College London, London, United Kingdom
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  • ORCID record for Ken B. Hanscombe
Jonathan R.I Coleman
2MRC Social, Genetic and Developmental Psychiatry Centre, King’s College London, London, United Kingdom
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Matthew Traylor
33Department of Clinical Neurosciences, University of Cambridge, Cambridge, United Kingdom
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Cathryn M. Lewis
1Department of Medical & Molecular Genetics, King’s College London, London, United Kingdom
2MRC Social, Genetic and Developmental Psychiatry Centre, King’s College London, London, United Kingdom
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Abstract

Summary The UK Biobank is a resource that includes detailed health-related data on about 500,000 individuals and is available to the research community. ukbtools removes all the upfront data wrangling required to get a single dataset for statistical analysis, and provides tools to assist in quality control, query of disease diagnoses, and retrieval of genetic metadata.

Availability The package is available for installation from the Comprehensive R Archive Network (CRAN), and includes a vignette describing the use of all functionality.

Contact  ken.b.hanscombe{at}kcl.ac.uk, https://github.com/kenhanscombe/ukbtools

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 30, 2017.
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ukbtools: An R package to manage and query UK Biobank data
Ken B. Hanscombe, Jonathan R.I Coleman, Matthew Traylor, Cathryn M. Lewis
bioRxiv 158113; doi: https://doi.org/10.1101/158113
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ukbtools: An R package to manage and query UK Biobank data
Ken B. Hanscombe, Jonathan R.I Coleman, Matthew Traylor, Cathryn M. Lewis
bioRxiv 158113; doi: https://doi.org/10.1101/158113

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