Abstract
Summary Working with protein structures at the genome-scale has been challenging in a variety of ways. Here, we present ssbio, a Python package which provides a framework to easily work with structural information in the context of genome-scale network reconstructions. The ssbio package provides an automated pipeline to construct high quality genome-scale models with protein structures (GEM-PROs), intuitively linking 3D structural data with established systems workflows.
Availability and Implementation ssbio is implemented in Python and available to download under the MIT license at http://github.com/SBRG/ssbio. Documentation and Jupyter notebook tutorials are available at http://ssbio.readthedocs.io/en/latest/.
Contact nmih{at}ucsd.edu
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
Posted July 18, 2017.
