Abstract
Small colony variants (SCVs) of Staphylococcus aureus typically lack a functional electron transport chain and cannot produce virulence factors such as leukocidins, hemolysins or the anti-oxidant staphyloxanthin. Despite this, SCVs are associated with persistent infections of the bloodstream, bones and prosthetic devices. The survival of SCVs in the host has been ascribed to intracellular residency, biofilm formation and resistance to antibiotics. However, the ability of SCVs to resist host defences is largely uncharacterised. To address this, we measured survival of wild-type and SCV S. aureus in whole human blood, which contains high numbers of neutrophils, the key defense against staphylococcal infection. Despite the loss of leukcocidin production and staphyloxanthin biosynthesis, SCVs defective for heme or menquinone biosynthesis were significantly more resistant to the oxidative burst than wild-type bacteria in a whole human blood model. Supplementation of the culture medium of the heme-auxotrophic SCV with heme, but not iron, restored growth, hemolysin and staphyloxanthin production, and sensitivity to the oxidative burst. Since Enterococcus faecalis is a natural heme auxotroph and cause of bloodstream infection, we explored whether restoration of the electron transport chain in this organism also affected survival in blood. Incubation of E. faecalis with heme increased growth and restored catalase activity, but resulted in decreased survival in human blood via increased sensitivity to the oxidative burst. Therefore, the lack of functional electron transport chains in SCV S. aureus and wild-type E. faecalis results in reduced growth rate but provides resistance to a key immune defence mechanism.
Introduction
Staphylococcus aureus is responsible for a raft of different infections of humans and animals [1-3]. The key host defence against infection is the neutrophil, which phagocytoses S. aureus and exposes it to a cocktail of reactive oxygen species (ROS) during a process known as the oxidative (or respiratory) burst [4-6]. Whilst this is often sufficient to clear infection, invasive staphylococcal diseases frequently lead to persistent or recurrent infections of the bones, joints, heart or implanted devices [1, 7–9]. The development of these hard to treat infections is often associated with the presence of small colony variants (SCVs) [10–17]. As the name suggests, SCVs form small colonies on agar plates, typically due to metabolic defects caused by mutations that abrogate the electron-transport chain or biosynthetic pathways [16–21]. For example, several clinical studies have isolated SCVs with mutations in genes required for heme or menaquinone biosynthesis, including from the bloodstream [17–20]. The slow growth of SCVs provides a strong selection pressure for reversion to the wild-type, either by repair of the causative mutation or the acquisition of a suppressor mutation [18,19,22]. This presents challenges to their study and so targeted deletion of genes within the hem or men operons, which confer a phenotype that is identical to that of clinical SCVs, has been used to enable their study without the problem of reversion to the wild-type [23–26], SCVs can also arise in the absence of mutation, resulting in a very unstable phenotype, although the molecular basis for this is unknown [27], The emergence of SCVs is a rare but consistent consequence of S. aureus replication, which generates a small sub-population of the variants [22]. However, SCV emergence is significantly increased in response to diverse environmental stresses including antibiotics, reactive oxygen species, low pH within host cell vacuoles and exoproducts from Pseudomonas, which frequently causes co-infections with S. aureus [26–33].
Despite their diverse molecular basis, most SCVs have similar phenotypic characteristics. For example, activity of the Agr quorum-sensing system is weak or absent, and therefore cytolytic toxin production is negligible whilst surface proteins are strongly expressed [25,34–36]. These properties enable SCVs to persist in non-immune host cells and form robust biofilms, which has been hypothesised to contribute to their ability to persist in host tissues [27,37–39]. Furthermore, SCVs are typically resistant to antibiotics including the aminoglycosides, sulphonamides or fusidic acid and are often less susceptible to other antibiotics compared to wild-type bacteria [40–44].
Whilst these phenotypic properties very likely contribute to staphylococcal persistence in the host, the ability of SCVs to resist phagocytic cells, the key host defence against S. aureus, is poorly understood. Although SCVs are resistant to the ROS H2O2, they lack several defences used by wild-type bacteria to protect against immune cells [26]. For example, staphyloxanthin pigment, which promotes wild-type survival of both the oxidative burst and antimicrobial peptides, is absent in SCVs [15,18,45–47]. Furthermore, wild-type bacteria secrete numerous cytolytic toxins that kill neutrophils and enable bacterial survival, but this is absent in SCVs [15,18,25,34]. SCVs also exhibit reduced coagulase activity and some isolates lack catalase, both of which have been linked to survival of wild-type bacteria in the host [15,18,26,48–50]. Therefore, the effect of a defective electron transport chain on the susceptibility of SCV S. aureus to the oxidative burst of neutrophils is unclear.
Enterococcus faecalis, another major cause of bloodstream infections, shares some of the phenotypic properties of S. aureus SCVs since it is naturally defective for heme production and therefore lacks a functional electron-transport chain [51–53]. However, E. faecalis encodes type a and b cytochromes, and the presence of exogenous heme promotes E. faecalis growth in air, confirming the presence of an otherwise intact respiratory chain [51–53]. Exogenous heme also restores catalase activity, which has been shown to promote H2O2 resistance [54–55]. As such, it is unclear what whether E. faecalis gains an advantage from being defective for heme biosynthesis, particularly with respect to host defences that generate reactive oxygen species such as neutrophils.
Therefore, the aim of this work was to determine how the absence of the electron transport chain affects the survival of S. aureus and E. faecalis exposed to the oxidative burst of neutrophils.
Methods
Bacterial strains and culture conditions
The bacterial strains used in this study are detailed in table 1. Staphylococci were grown in tryptic soy broth (TSB) at 37 °C with shaking (180 RPM) for 18 h to late stationary phase. Enterococci were grown in Todd-Hewitt broth supplemented with 0.5% yeast extract (THY) at 37 °C with shaking (180 RPM) for 18 h to late stationary phase. For assays involving human blood, bacteria were plated onto Columbia blood agar (CBA) or THY supplemented with 5% sterile defibrinated sheep’s blood to neutralise any remaining oxidants from the assay. For some experiments iron (and other cations) was removed from TSB (100 ml) by incubation with Chelex resin (6 g) for 16 h at 4 °C with stirring. The following individual metals were then replaced: ZnCI2 (25 µM), CaCI2 (1 mM), MgCI2 (1 mM), MnCI2 (25 µM). Iron was added in the form of FeCI3 (1 or 10 µM) or heme (10 µM).
Genetic manipulation of S. aureus
The construction of ΔmenD, ΔhemB ΔagrA, ΔagrC and ΔRNAIII mutants was achieved using pIMAY as described previously [25,26,56]. To construct the double ΔhemBΔagr mutants, the three agr mutants (ΔagrA, ΔagrC and ΔRNAIII) were made electrocompetent and the hemB gene deleted using pIMAY as described previously [25].
Mutants lacking ΔhemB or ΔmenD were complemented with pCL55 containing the relevant gene under the control of the hem or men operon promoters respectively [26]. To control for pleiotropic effects of plasmid insertion into geh, pCL55 alone was transformed into hemB and menD mutant strains. The ΔagrC mutant was complemented with pCN34 containing a copy of the agrC gene under the control of the agr P3 promoter, and pCN34 alone (pEmpty) was used to control for pleitropic effects of the plasmid. In addition to wild-type agrC, plasmids containing mutated forms of agrC which confer a constitutively active phenotype were also transformed into the ΔagrC mutant strain [57].
Whole human blood survival assay
The survival of bacteria in whole human blood was done as described previously [58]. Ethical approval for drawing and using human blood was obtained from the Regional Ethics committee and Imperial NHS trust tissue bank (REC Wales approval: 12/WA/0196, ICHTB HTA licence: 12275). Blood was drawn from healthy human donors into tubes containing EDTA and used immediately in assays based on a previously described protocol [4]. Suspensions of bacteria (105 CFU in 10 µl PBS) were mixed with blood (90 µl) and incubated for up to 6 h at 37 °C with mixing. At indicated time points aliquots were taken, diluted serially in PBS and plated onto CBA plates to enumerate CFU. In some assays blood was pre-treated (10 min) with Diphenyleneiodonium (DPI) or an identical volume of DMSO alone to control for solvent effects [4].
Measurement of bacterial growth
Stationary-phase bacteria were diluted 1:50 into a final volume of 200 µl TSB in microtitre plates (Corning) before incubation at 37 °C with shaking (500 RPM) in a POLARstar Omega multiwell plate reader. Bacterial growth was measured using OD600 measurements every 30 min for a total of 17 h [57].
Hemolysin production
The hemolytic activity of bacterial culture supernatants was determined as described previously [25]. Briefly, culture supernatants were recovered by centrifugation (13,000 X g, 10 min) of stationary-phase cultures. The supernatant was then diluted in 2-fold steps using fresh TSB. Aliquots from each dilution (100 µl) were mixed with an equal volume of 2 % sheep blood suspension in PBS and incubated at 37 °C for 1 h in a static incubator. Subsequently, unlysed blood cells were removed by centrifugation and the supernatant containing lysed erythrocytes transferred to a new microtitre plate. The degree of erythrocyte lysis was quantified by measuring the absorbance of the supernatant at A450 and reference to controls. Erythrocytes incubated with TSB alone or TSB containing 1 % TX-100 served as negative and positive controls respectively.
Measurement of phagocytosis and immune cell viability
Phagocytosis of bacteria in whole human blood was determined using a protocol based on that described previously [59]. Stationary-phase bacteria (1 ml) were pelleted (17,000 X g, 3 min) and washed twice with PBS. The pellet was then resuspended in 200 µl of 1.5 mM Fluorescein isothiocyanate (FITC) dissolved in freshly prepared carbonate buffer (0.05 M NaCO3 and 0.1 M NaCI). Bacteria were then incubated for 60 min (room-temperature with tumbling) in the dark. FITC-labelled bacteria were then washed three times in carbonate buffer and adjusted to 1 × 106 CFU ml-1 in PBS. FITC-labelled bacteria (10 µl, 1 × 104 CFU) were added to 96-well plates prior to the addition of 90 µl of freshly isolated blood, as described for the whole blood killing assay. At each time point (0, 2, 4 and 6 h), the blood/bacteria mixture (100 µl) was added to 900 µl red blood cell lysis solution (eBioscience) and incubated at room temperature in the dark for 10 min. Samples were then centrifuged (500 × g, 10 min) and the resulting pellet washed once in PBS (1 ml) before a final centrifugation step (500 × g, 10 min) and then the pellet containing immune cells and bacteria was resuspended in 100 µl PBS or 1% paraformaldehyde (PFA; Affymetrix) if no further staining was required. Where samples were to be analysed for host cell death, samples were incubated in PBS containing the Zombie Violet live-dead dye (Biolegend) at a 1:500 dilution in the dark. Free primary amine groups were quenched using 1.4 ml 1% bovine serum albumin (BSA) and samples were centrifuged (500 × g, 10 min) before resuspension in 100 µl 1% PFA. Positive controls were generated by heat-killing host cells (100 °C, 10 min) prior to Zombie staining. Samples were then fixed overnight (12-16 h) in 1% paraformaldehyde at 4 °C. Immune cell/bacteria samples were analysed on a Fortessa flow cytometer (BD) and at least 10,000 events were captured. Green (FITC-bacteria) and violet (Zombie-labelled host cells) fluorescence were detected at 488/530 (30) nm and 404/450 nm, respectively. Based on preliminary analyses and using the methodology of Surewaard et al. (2013) [60], free bacteria (i.e. bacteria not phagocytosed) were identified as events with a side scatter of < 50K. By contrast, host cells were identified as events with a side scatter of > 50K. Samples were analysed alongside controls, which consisted of bacteria without FITC labelling, host cells with or without Zombie stain, uninfected host cells and heat-killed host cells as appropriate. Data were analysed using FlowJo software (Version 10). Compensation was not necessary as the spectra of the fluorescent signals did not overlap.
Catalase assay
Catalase activity of bacterial cells was determined as described previously [26]. Overnight bacterial cultures (1 ml) were washed three times in PBS and 107 CFU added to 100 µM H2O2 in PBS (1 ml). Bacteria were incubated in the H2O2 in the dark at 37 °C. At the start of the assay and every 15 min, 200 µl of sample was pelleted (17,000 × g) and 20 µl added to a 96 well microtitre plate. The concentration of remaining H2O2 was determined using a Pierce Quantitative Peroxide Assay (Aqueous Compatible) kit.
Results
The loss of the electron transport chain promotes survival of S. aureus in human blood
To study the susceptibility of electron transport chain-deficient SCVs to the oxidative burst, we employed the well-established ex vivo whole human blood model of infection. This is model is appropriate because S. aureus is a major cause of bacteraemia and blood contains a high density of neutrophils, as well as the required opsonins and other relevant immune factors such as platelets [4,61,62]. In this model system, S. aureus is rapidly phagocytosed by neutrophils and exposed to the oxidative burst [4,61,62].
Freshly-drawn human blood containing anti-coagulant (EDTA) was incubated with wild-type S. aureus USA300, or mutants with deletions of hemB or menD, and survival determined over time by CFU counts. Preliminary experiments determined that individual donors had slightly different anti-staphylococcal activity and so at least 3 different donors were used for each experiment (Fig. 1A). However, for each of the 5 donors we observed a consistent decrease in CFU counts of wild-type bacteria over time with just 1-5% of the inoculum surviving after 6 h (Fig. 1A). By contrast, SCVs defective for heme-or menaquinone-biosynthesis survived at much higher levels than the wild type over the entire duration of the assay with 70% of the ΔhemB mutant inoculum and 69% of ΔmenD viable after 6 h incubation in blood (Fig. 1B,C).
Complementation of the hemB or menD mutations conferring the SCV phenotype restored the wild-type phenotype for growth and staphyloxanthin production, and resulted in significantly decreased survival in blood (Fig. 1B,C,D,E,F). This confirmed that enhanced SCV survival in blood was due to the loss of heme or menaquinone biosynthesis, rather than the acquisition of adventitious mutations during genetic manipulation. Therefore, despite the lack of staphyloxanthin pigment and cytolysin production, loss of the electron transport chain confers a survival advantage to S. aureus in blood.
Wild-type S. aureus is more sensitive to the oxidative burst than SCVs
Having demonstrated that survival of SCVs in blood is greater than that of the wild-type, we sought to understand why. Several previous studies have shown that incubation of S. aureus in whole human blood results in rapid phagocytic uptake of the bacterium by polymorphonuclear leukocytes (PMNs) [4,61,62]. We confirmed those findings and found no differences in the phagocytosis of wild-type, ΔhemB or ΔmenD mutants (Fig. 2A). We also demonstrated that the viability of neutrophils that phagocytosed S. aureus did not vary between wild-type and SCVs (Fig. 2B). Therefore, both immune evasion and killing of immune cells by SCVs were ruled out as an explanation for their ability to survive in human blood.
The principle mechanism by which neutrophils kill S. aureus is the oxidative burst [4–6]. To confirm that this was the case in our model system we measured bacterial viability in human blood treated with diphenyleneiodonium (DPI), which blocks the oxidative burst, or the DMSO solvent alone. Suppression of NADPH with DPI, but not DMSO alone, resulted in significantly elevated survival of wild-type S. aureus, confirming that the oxidative burst is the key defence against S. aureus in human blood (Fig. 2C) [4–6]. The addition of DPI to blood did not significantly alter SCV CFU counts, since survival was already very high (Fig. 2C). Therefore, SCV S. aureus appears to be significantly less susceptible to the oxidative burst than wild-type bacteria. This is in agreement with our previously reported finding that both the ΔhemB and ΔmenD SCVs were more resistant to H2O2 than wild-type bacteria, and provides an explanation for the increased survival of SCVs in blood [26].
Agr activity promotes the survival of wild-type but not SCV S. aureus in blood
Although Agr-regulated toxins have been shown to kill neutrophils, several clinical studies have shown an association of Agr dysfunction with persistent bacteremia [63]. Therefore, we considered the possibility that the weak Agr activity of SCVs contributed to their survival in blood.
To test this, we compared the survival of wild-type and Agr-defective strains in whole human blood. This revealed a significantly greater loss of viability of agr mutants compared with the wild-type (Fig. 3A). In particular, mutants lacking quorum-sensing components of Agr (ΔagrA or ΔagrC) were approximately 4-fold more susceptible to immune cells in blood than the wild-type, whilst the RNAIII mutant was 2-fold more susceptible than the wild-type (Fig. 3A). This finding is in keeping with previous work that showed that AgrA-regulated PSMs contribute to survival of S. aureus within the phagocytic vacuole of neutrophils, in addition to RNAIII-regulated toxins [60]. Therefore, a functional Agr system promotes the survival of wild-type bacteria in human blood.
Complementation of the ΔagrC mutant with a wild-type copy of the gene increased survival in blood (Fig. 3B). However, complementation of ΔagrC with mutant copies of agrC which confer constitutive Agr activity, even in the presence of serum [57], did not promote bacterial survival above that of the wild-type gene (Fig. 3B).
Although Agr activity is extremely weak in SCVs, we explored whether this contributed to their survival by generating ΔhemB mutants defective for agrA, agrC or RNAIII, and measuring their survival in blood (Fig. 3C). This revealed that survival of each of the ΔhemBΔagr-mutants was as high as for the ΔhemB mutant with an intact agr operon. Therefore, whilst loss of Agr activity in the wild-type reduces survival in human blood, the lack of Agr activity in SCVs is not detrimental for their survival. This indicates that toxin production is an important mechanism by which wild-type S. aureus survives phagocytosis. By contrast, since SCVs can survive the oxidative burst they do not need toxins to survive phagocytosis.
Restoration of the electron transport chain with heme results in decreased survival of SCVs in blood
During infection, S. aureus acquires iron from the host, predominantly via the acquisition of heme liberated from erythrocytes via hemolytic toxins [64]. In addition to acting as an iron source, heme can also be utilised by heme-auxotrophic SCVs to restore the electron transport chain [18,26]. To determine how heme influenced the phenotype of heme- and menquinone-defective SCVs, and their susceptibility to the oxidative burst, we grew wild-type or SCV S. aureus in media deficient for heme and containing minimal free iron (1 µM FeCI3), abundant iron (10 µM FeCI3), or in the presence of heme (10 µM).
The growth rate of wild-type S. aureus was not significantly affected by the presence of the higher concentration of FeCI3 or heme, although the latter led to a slight increase in the length of the lag phase (Fig. 4A). Similarly, abundant iron did not affect growth of the ΔmenD SCV, but heme caused slight growth retardation (Fig. 4A). By contrast, abundant iron slightly promoted the growth rate of the ΔhemB SCV, whilst heme enhanced the growth almost to wild-type levels (Fig. 4A). In addition to the growth rate, heme supplementation restored hemolytic activity and staphyloxanthin biosynthesis to the ΔhemB mutant (Fig. 4B). However, heme supplementation of the ΔhemB mutant also resulted in significantly increased susceptibility to the oxidative burst of neutrophils in blood (Fig. 4C), which is in keeping with our previous finding that heme supplementation renders heme-auxotrophic SCVs sensitive to H2O2 [26]. By contrast, supplementation of the medium with iron had no effect on susceptibility of the ΔhemB mutant to the oxidative burst or H2O2 (Fig. 4C). This is in agreement with previous work showing that iron-loading of S. aureus does not alter susceptibility to the oxidative burst of neutrophils [65,66]
By contrast to the ΔhemB mutant, the susceptibility of both the wild-type and ΔmenD mutant to the oxidative burst was unchanged by growth in the presence of heme. Therefore, at the concentration used (10 µM), heme does not directly sensitise S. aureus to the oxidative burst. Rather, it is the restoration of the electron-transport chain in the ΔhemB mutant that confers sensitivity to the oxidative burst.
The absence of an electron-transport chain enables survival of Enterococcus faecalis in human blood
The elevated survival of the S. aureus ΔhemB mutant, relative to wild-type, led us to consider whether a similar phenomenon occurred with Enterococcus faecalis, which despite producing cytochromes lacks a functional electron transport chain due to an inability to synthesise heme [51–53]. However, E. faecalis employs heme uptake systems to scavenge heme from the environment and therefore supplementation of the culture medium with heme results in increased growth under aerobic conditions. We confirmed this in two different E. faecalis strains (Fig. 5A,B), which grew to a higher optical density in the presence of heme. In addition, E. faecalis grown in the presence of heme produce a functional catalase, which we observed in both of the strains examined (Fig. 5C,D). However, as observed for the ΔhemB SCV, growth of E. faecalis in the presence of heme led to significantly diminished survival in human blood by increasing sensitivity to the oxidative burst (Fig. 5E,F). Therefore, as for SCV S. aureus, the absence of the electron-transport chain in E. faecalis promotes survival in the bloodstream by reducing sensitivity to oxidative stress generated by host immune cells.
Discussion
During infection S. aureus faces two major threats: host defences and antibiotic therapy. Previous work has shown that SCVs of S. aureus are less susceptible to antibiotics than wild-type bacteria. Our data demonstrate that the SCV S. aureus is also less susceptible to host immune defences. These data fit with a previous study that revealed that SCVs are less sensitive than wild-type to host-derived antimicrobial peptides [67]. However, the resistance of SCVs to both the oxidative burst and AMPs is surprising given the lack of staphyloxanthin pigment, which contributes to resistance of wild-type S. aureus to both ROS and AMPs [4,68].
We do not currently understand the molecular basis of ROS resistance in SCVs. However, the damaging effects of ROS are proposed to occur via the Fenton reaction, which involves the reaction of H2O2 with free iron leading to the generation of highly-reactive hydroxyl radicals [69,70]. The lack of an electron-transport chain, together with the associated decreased TCA activity (which utilises iron-containing enzymes such as aconitase) in SCVs is hypothesised to result in decreased iron content relative to wild-type bacteria. Furthermore, there is evidence that the electron transport chain generates superoxide radicals that liberate iron from iron-sulphur clusters, making it available for the Fenton reaction [71].
The ability of S. aureus SCVs to survive the oxidative burst comes at a cost. The electron-transport chain enables aerobic respiration, rapid bacterial growth and toxin production. These toxins include hemolysins that enable S. aureus to access heme, the bacterium’s primary source of iron during infection [72]. Therefore, the absence of hemolysin production by the ΔhemB mutant enables maintenance of the SCV phenotype in the presence of red blood cells. The menaquinone-defective SCV cannot restore the wild-type phenotype using host-derived materials and therefore maintains its phenotype regardless of hemolysin production.
E. faecalis lacks the necessary biosynthetic machinery to synthesise heme making it a heme auxotroph [51–53]. However, some strains secrete a cytolysin with hemolytic activity that provides a mechanism of heme acquisition[73]. The liberation of heme from erythrocytes would be expected to promote growth and restore catalase activity, but would also increase susceptibility to host defences. The maintenance of cytochromes and catalase that are restored by exogenous heme suggests that heme acquisition is a consistent and beneficial event during colonisation and/or infection. What is not clear however, is when and where heme acquisition occurs. For example, isolates recovered from patients with infective endocarditis, an infection of the heart valves that persists despite a robust immune response, are typically defective for hemolysin production [73,74]. This may indicate that hemolysin production, and thus heme acquisition, is undesirable at this site. By contrast, 30-40% of E. faecalis isolates carried in the gut or isolated from urinary-tract infections are hemolytic [74]. However, further work is needed to understand the basis for this observation and whether heme-mediated susceptibility to the oxidative burst plays a role.
Previous work reported that heme supplementation enabled E. faecalis to survive H2O2 challenge by restoring catalase activity [54–55]. However, whilst we also observed restoration of catalase activity in E. faecalis supplied with heme, this did not correlate with increased resistance to the oxidative burst. We have shown previously that the ΔhemB mutant is catalase-deficient but was much less susceptible to the oxidative burst than wild-type bacteria [26]. This indicates that catalase is not required for survival of the oxidative burst, a finding that is supported by previous work with S. aureus that showed a catalase mutant was as virulent as the wild-type [75].
In summary, SCV S. aureus sacrifices fast growth and toxin production for enhanced resistance to host defences and antibiotics. This dramatic change in phenotype may enable the transition from highly-damaging, acute infection to a less pathogenic but persistent infection type. Our data indicate that the lack of heme production in E. faecalis also promotes survival in human blood, suggesting a common survival mechanism between these two pathogens.
Acknowledgements
The following are gratefully acknowledged for providing bacterial strains, phage or reagents: Ruth Massey (University of Bath), Malcolm Horsburgh (University of Liverpool), Tim Foster (Trinity College Dublin), Angela Nobbs (University of Bristol), and the Network on Antimicrobial Resistance in Staphylococcus aureus (NARSA) Program: under NIAID/NIH Contract No. HHSN272200700055C. A.M.E. acknowledges funding from the Royal Society, Department of Medicine (Imperial College), and from the Imperial NIHR Biomedical Research Centre, Imperial College London. K.L.P. was supported by a PhD studentship from the Faculty of Medicine, Imperial College London. K.P.H. is supported by an MRC-funded PhD studentship awarded to the Centre for Molecular Bacteriology and Infection, Imperial College London.