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The impact of experimental design choices on parameter inference for models of growing cell colonies

View ORCID ProfileAndrew Parker, View ORCID ProfileMatthew J. Simpson, View ORCID ProfileRuth E. Baker
doi: https://doi.org/10.1101/171710
Andrew Parker
University of Oxford;
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  • For correspondence: parker@maths.ox.ac.uk
Matthew J. Simpson
Queensland University of Technology
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Ruth E. Baker
University of Oxford;
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Abstract

To better understand development, repair and disease progression it is useful to quantify the behaviour of proliferative and motile cell populations as they grow and expand to fill their local environment. Inferring parameters associated with mechanistic models of cell colony growth using quantitative data collected from carefully designed experiments provides a natural means to elucidate the relative contributions of various processes to the growth of the colony. In this work we explore how experimental design impacts our ability to infer parameters for simple models of the growth of proliferative and motile cell populations. We adopt a Bayesian approach, which allows us to characterise the uncertainty associated with estimates of the model parameters. Our results suggest that experimental designs that incorporate initial spatial heterogeneities in cell positions facilitate parameter inference without the requirement of cell tracking, whilst designs that involve uniform initial placement of cells require cell tracking for accurate parameter inference. As cell tracking is an experimental bottleneck in many studies of this type, our recommendations for experimental design provide for significant potential time and cost savings in the analysis of cell colony growth.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted August 02, 2017.
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The impact of experimental design choices on parameter inference for models of growing cell colonies
Andrew Parker, Matthew J. Simpson, Ruth E. Baker
bioRxiv 171710; doi: https://doi.org/10.1101/171710
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The impact of experimental design choices on parameter inference for models of growing cell colonies
Andrew Parker, Matthew J. Simpson, Ruth E. Baker
bioRxiv 171710; doi: https://doi.org/10.1101/171710

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