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Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
View ORCID ProfilePhilipp Berens, Jeremy Freeman, View ORCID ProfileThomas Deneux, Nicolay Chenkov, View ORCID ProfileThomas McColgan, Artur Speiser, View ORCID ProfileJakob H. Macke, View ORCID ProfileSrinivas C. Turaga, View ORCID ProfilePatrick Mineault, Peter Rupprecht, View ORCID ProfileStephan Gerhard, View ORCID ProfileRainer W. Friedrich, View ORCID ProfileJohannes Friedrich, Liam Paninski, View ORCID ProfileMarius Pachitariu, View ORCID ProfileKenneth D. Harris, Ben Bolte, Timothy A. Machado, View ORCID ProfileDario Ringach, Jasmine Stone, Luke E. Rogerson, Nicolas J. Sofroniew, Jacob Reimer, View ORCID ProfileEmmanouil Froudarakis, View ORCID ProfileThomas Euler, Miroslav Román Rosón, Lucas Theis, View ORCID ProfileAndreas S. Tolias, Matthias Bethge
doi: https://doi.org/10.1101/177956
Philipp Berens
1Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
2Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
3Bernstein Center for Computational Neuroscience, University of Tübingen, Tübingen, Germany
Jeremy Freeman
4Chan Zuckerberg Initiative, San Francisco, USA
Thomas Deneux
5Unit de Neuroscience, Information et Complexit, Centre National de la Recherche Scientifique, Gif-sur-Yvette, France
Nicolay Chenkov
6Bernstein Center for Computational Neuroscience and Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany
Thomas McColgan
6Bernstein Center for Computational Neuroscience and Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany
Artur Speiser
7research center caesar, an associate of the Max Planck Society, Bonn, Germany
Jakob H. Macke
7research center caesar, an associate of the Max Planck Society, Bonn, Germany
Srinivas C. Turaga
8Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
Patrick Mineault
9Independent Researcher
Peter Rupprecht
10Friedrich Miescher Institute, Basel, Switzerland
11University of Basel, Basel, Switzerland
Stephan Gerhard
10Friedrich Miescher Institute, Basel, Switzerland
Rainer W. Friedrich
10Friedrich Miescher Institute, Basel, Switzerland
11University of Basel, Basel, Switzerland
Johannes Friedrich
12Departments of Statistics and Neuroscience, Grossman Center for the Statistics of Mind, and Center for Theoretical Neuroscience, Columbia University, New York, NY, USA
Liam Paninski
12Departments of Statistics and Neuroscience, Grossman Center for the Statistics of Mind, and Center for Theoretical Neuroscience, Columbia University, New York, NY, USA
Marius Pachitariu
13University College, London, UK
Kenneth D. Harris
13University College, London, UK
Ben Bolte
14Emory University, Atlanta, USA
Timothy A. Machado
12Departments of Statistics and Neuroscience, Grossman Center for the Statistics of Mind, and Center for Theoretical Neuroscience, Columbia University, New York, NY, USA
Dario Ringach
15University of California, Los Angeles, CA, USA
Jasmine Stone
8Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
16Yale University, New Haven, CT, USA
Luke E. Rogerson
1Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
2Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
3Bernstein Center for Computational Neuroscience, University of Tübingen, Tübingen, Germany
Nicolas J. Sofroniew
8Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
Jacob Reimer
17Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
18Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
Emmanouil Froudarakis
17Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
18Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
Thomas Euler
1Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
2Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
3Bernstein Center for Computational Neuroscience, University of Tübingen, Tübingen, Germany
Miroslav Román Rosón
1Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
2Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
19Graduate School of Neural & Behavioural Sciences, International Max Planck Research School, University of Tübingen, Tübingen, Germany
20Division of Neurobiology, Department Biology II, LMU Munich, Munich, Germany
Lucas Theis
21Twitter, London, UK
Andreas S. Tolias
16Yale University, New Haven, CT, USA
17Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
22Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA
Matthias Bethge
2Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
3Bernstein Center for Computational Neuroscience, University of Tübingen, Tübingen, Germany
23Institute of Theoretical Physics, University of Tübingen, Tübingen, Germany
Article usage
Posted February 26, 2018.
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nicolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H. Macke, Srinivas C. Turaga, Patrick Mineault, Peter Rupprecht, Stephan Gerhard, Rainer W. Friedrich, Johannes Friedrich, Liam Paninski, Marius Pachitariu, Kenneth D. Harris, Ben Bolte, Timothy A. Machado, Dario Ringach, Jasmine Stone, Luke E. Rogerson, Nicolas J. Sofroniew, Jacob Reimer, Emmanouil Froudarakis, Thomas Euler, Miroslav Román Rosón, Lucas Theis, Andreas S. Tolias, Matthias Bethge
bioRxiv 177956; doi: https://doi.org/10.1101/177956
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nicolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H. Macke, Srinivas C. Turaga, Patrick Mineault, Peter Rupprecht, Stephan Gerhard, Rainer W. Friedrich, Johannes Friedrich, Liam Paninski, Marius Pachitariu, Kenneth D. Harris, Ben Bolte, Timothy A. Machado, Dario Ringach, Jasmine Stone, Luke E. Rogerson, Nicolas J. Sofroniew, Jacob Reimer, Emmanouil Froudarakis, Thomas Euler, Miroslav Román Rosón, Lucas Theis, Andreas S. Tolias, Matthias Bethge
bioRxiv 177956; doi: https://doi.org/10.1101/177956
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