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Efficacy of SHP2 phosphatase inhibition in cancers with nucleotide-cycling oncogenic RAS, RAS-GTP dependent oncogenic BRAF and NF1 loss

Robert J. Nichols, Franziska Haderk, Carlos Stahlhut, Christopher J. Schulze, Golzar Hemmati, David Wildes, Christos Tzitzilonis, Kasia Mordec, Abby Marquez, Jason Romero, Daphne Hsieh, Gert Kiss, Elena S. Koltun, Adrian L. Gill, Mallika Singh, Mark A. Goldsmith, Jacqueline A. M. Smith, Trever G. Bivona
doi: https://doi.org/10.1101/188730
Robert J. Nichols
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Franziska Haderk
2Departments of Medicine, San Francisco, San Francisco, CA, USA
3Cellular and Molecular Pharmacology, San Francisco, San Francisco, CA, USA
4Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA,
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Carlos Stahlhut
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Christopher J. Schulze
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Golzar Hemmati
2Departments of Medicine, San Francisco, San Francisco, CA, USA
3Cellular and Molecular Pharmacology, San Francisco, San Francisco, CA, USA
4Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA,
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David Wildes
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Christos Tzitzilonis
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Kasia Mordec
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Abby Marquez
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Jason Romero
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Daphne Hsieh
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Gert Kiss
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Elena S. Koltun
5Department of Chemistry, Revolution Medicines, Inc., Redwood City, CA, USA
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Adrian L. Gill
5Department of Chemistry, Revolution Medicines, Inc., Redwood City, CA, USA
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Mallika Singh
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Mark A. Goldsmith
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
5Department of Chemistry, Revolution Medicines, Inc., Redwood City, CA, USA
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Jacqueline A. M. Smith
1Department of Biology, Revolution Medicines, Inc., Redwood City, CA, USA
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Trever G. Bivona
2Departments of Medicine, San Francisco, San Francisco, CA, USA
3Cellular and Molecular Pharmacology, San Francisco, San Francisco, CA, USA
4Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA,
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Abstract

Oncogenic alterations in the RAS-RAF-MEK-ERK pathway, including mutant forms of KRAS, BRAF, and loss of the tumor suppressor and RAS GTPase-activating protein (GAP) NF1, drive the growth of a wide spectrum of human cancers. While BRAF and MEK inhibitors are effective in many patients with oncogenic BRAF V600E, there are no effective targeted therapies for individuals with cancers driven by other pathway alterations, including oncogenic KRAS, non-V600E BRAF, and NF1 loss. Here, we show that targeting the PTPN11/SHP2 phosphatase with a novel small molecule allosteric inhibitor is effective against cancers bearing nucleotide-cycling oncogenic RAS (e.g. KRAS G12C), RAS-GTP dependent oncogenic BRAF (e.g. class 3 BRAF mutants), or NF1 loss in multiple preclinical models in vitro and in vivo. SHP2 inhibition suppressed the levels of RAS-GTP and phosphorylated ERK in these models and induced growth inhibition. Expression of a constitutively active mutant of the RAS guanine nucleotide exchange factor (GEF) SOS1 rescued cells from the effects of SHP2 inhibition, suggesting that SHP2 blockade decreases oncogenic RAS-RAF-MEK-ERK signaling by disrupting SOS1-mediated RAS-GTP loading. Our findings illuminate a critical function for SHP2 in promoting oncogenic RAS activation and downstream signaling in cancers with nucleotide-cycling oncogenic RAS, RAS-GTP dependent oncogenic BRAF, and NF1 loss. SHP2 inhibition thus represents a rational, biomarker-driven therapeutic strategy to be tested in patients with cancers of diverse origins bearing these oncogenic drivers and for which current treatments are largely ineffective.

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Posted September 14, 2017.
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Efficacy of SHP2 phosphatase inhibition in cancers with nucleotide-cycling oncogenic RAS, RAS-GTP dependent oncogenic BRAF and NF1 loss
Robert J. Nichols, Franziska Haderk, Carlos Stahlhut, Christopher J. Schulze, Golzar Hemmati, David Wildes, Christos Tzitzilonis, Kasia Mordec, Abby Marquez, Jason Romero, Daphne Hsieh, Gert Kiss, Elena S. Koltun, Adrian L. Gill, Mallika Singh, Mark A. Goldsmith, Jacqueline A. M. Smith, Trever G. Bivona
bioRxiv 188730; doi: https://doi.org/10.1101/188730
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Efficacy of SHP2 phosphatase inhibition in cancers with nucleotide-cycling oncogenic RAS, RAS-GTP dependent oncogenic BRAF and NF1 loss
Robert J. Nichols, Franziska Haderk, Carlos Stahlhut, Christopher J. Schulze, Golzar Hemmati, David Wildes, Christos Tzitzilonis, Kasia Mordec, Abby Marquez, Jason Romero, Daphne Hsieh, Gert Kiss, Elena S. Koltun, Adrian L. Gill, Mallika Singh, Mark A. Goldsmith, Jacqueline A. M. Smith, Trever G. Bivona
bioRxiv 188730; doi: https://doi.org/10.1101/188730

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