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The Parasite Extinction Assessment & Red List: an open-source, online biodiversity database for neglected symbionts

View ORCID ProfileColin J. Carlson, View ORCID ProfileOliver C. Muellerklein, View ORCID ProfileAnna J. Phillips, View ORCID ProfileKevin R. Burgio, View ORCID ProfileGiovanni Castaldo, View ORCID ProfileCarrie A. Cizauskas, View ORCID ProfileGraeme S. Cumming, View ORCID ProfileTad A. Dallas, Jorge Doña, Nyeema Harris, View ORCID ProfileRoger Jovani, Zhongqi Miao, View ORCID ProfileHeather Proctor, Hyun Seok Yoon, View ORCID ProfileWayne M. Getz
doi: https://doi.org/10.1101/192351
Colin J. Carlson
1Department of Environmental Science, Policy, and Management, University of California Berkeley; Berkeley, CA, United States.
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  • For correspondence: cjcarlson@berkeley.edu omuellerklein@berkeley.edu
Oliver C. Muellerklein
1Department of Environmental Science, Policy, and Management, University of California Berkeley; Berkeley, CA, United States.
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Anna J. Phillips
2Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution; Washington, DC, United States.
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Kevin R. Burgio
3Department of Ecology and Evolutionary Biology, University of Connecticut; Storrs, CT, UnitedStates.
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Giovanni Castaldo
1Department of Environmental Science, Policy, and Management, University of California Berkeley; Berkeley, CA, United States.
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Carrie A. Cizauskas
1Department of Environmental Science, Policy, and Management, University of California Berkeley; Berkeley, CA, United States.
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Graeme S. Cumming
4ARC Centre of Excellence in Coral Reef Studies, James Cook University;Townsville, Queensland, Australia.
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Tad A. Dallas
5Department of Environmental Science and Policy,University of California; Davis, CA, United States.
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Jorge Doña
6Department of Evolutionary Ecology,Estación Biológica de Doñan(CSIC); Americo Vespucio s/n, E-41092 Sevilla, Spain.
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Nyeema Harris
7Ecology and Evolutionary Biology, University of Michigan; Ann Arbor, MI, United States.
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Roger Jovani
6Department of Evolutionary Ecology,Estación Biológica de Doñan(CSIC); Americo Vespucio s/n, E-41092 Sevilla, Spain.
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Zhongqi Miao
1Department of Environmental Science, Policy, and Management, University of California Berkeley; Berkeley, CA, United States.
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Heather Proctor
8Department of Biological Sciences, University of Alberta; Edmonton, Alberta, Canada.
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Hyun Seok Yoon
1Department of Environmental Science, Policy, and Management, University of California Berkeley; Berkeley, CA, United States.
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Wayne M. Getz
1Department of Environmental Science, Policy, and Management, University of California Berkeley; Berkeley, CA, United States.
9School of Mathematical Sciences, University of KwaZulu-Natal; South Africa.
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Abstract

Parasite conservation is a rapidly growing field at the intersection of ecology, epidemiology, parasitology, and public health. The overwhelming diversity of parasitic life on earth, and recent work showing that parasites and other symbionts face severe extinction risk, necessitates infrastructure for parasite conservation assessments. Here, we describe the release of the Parasite Extinction Assessment & Red List (PEARL) version 1.0, an open-access database of conservation assessments and distributional data for almost 500 macroparasitic invertebrates. The current approach to vulnerability assessment is based on range shifts and loss from climate change, and will be expanded as additional data (e.g., host-parasite associations and coextinction risk) is consolidated in PEARL. The web architecture is also open-source, scalable, and extensible, making PEARL a template for more eZcient red listing for other high-diversity, data-de1cient groups. Future iterations will also include new functionality, including a user-friendly open data pository and automated assessment and re-listing.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted September 21, 2017.
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The Parasite Extinction Assessment & Red List: an open-source, online biodiversity database for neglected symbionts
Colin J. Carlson, Oliver C. Muellerklein, Anna J. Phillips, Kevin R. Burgio, Giovanni Castaldo, Carrie A. Cizauskas, Graeme S. Cumming, Tad A. Dallas, Jorge Doña, Nyeema Harris, Roger Jovani, Zhongqi Miao, Heather Proctor, Hyun Seok Yoon, Wayne M. Getz
bioRxiv 192351; doi: https://doi.org/10.1101/192351
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The Parasite Extinction Assessment & Red List: an open-source, online biodiversity database for neglected symbionts
Colin J. Carlson, Oliver C. Muellerklein, Anna J. Phillips, Kevin R. Burgio, Giovanni Castaldo, Carrie A. Cizauskas, Graeme S. Cumming, Tad A. Dallas, Jorge Doña, Nyeema Harris, Roger Jovani, Zhongqi Miao, Heather Proctor, Hyun Seok Yoon, Wayne M. Getz
bioRxiv 192351; doi: https://doi.org/10.1101/192351

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