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Mitochondrial phylogeography reveals high diversity and unique divergent lineage in Indian Dugongs (Dugong dugon)

View ORCID ProfileYellapu Srinivas, View ORCID ProfileAnant Pande, Swapnali Gole, P.V.R. Prem Jothi, K. Madhu Magesh, Sameeha Pathan, Sohini Dudhat, Rukmini Shekar, Devanshi Kukadia, Jeyaraj Antony Johnson, View ORCID ProfileSamrat Mondol, Kuppusamy Sivakumar
doi: https://doi.org/10.1101/2019.12.16.877415
Yellapu Srinivas
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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Anant Pande
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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Swapnali Gole
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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P.V.R. Prem Jothi
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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K. Madhu Magesh
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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Sameeha Pathan
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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Sohini Dudhat
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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Rukmini Shekar
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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Devanshi Kukadia
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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Jeyaraj Antony Johnson
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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Samrat Mondol
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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  • For correspondence: ksivakumar@wii.gov.in samrat@wii.gov.in
Kuppusamy Sivakumar
Wildlife Institute of India, Chandrabani, Dehradun- 248001, Uttarakhand, India
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  • For correspondence: ksivakumar@wii.gov.in samrat@wii.gov.in
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ABSTRACT

  1. India plays a central role in dugong conservation by hosting the largest population within south Asia. Current knowledge on status of Indian dugongs is limited due to paucity of reliable ecological data. This study generates mitochondrial control region sequences from about 10% of dugong population from major dugong populations within India. These data was compared with the global data to assess genetic lineages, population structure and genetic diversity of Indian populations.

  2. Multiple analyses suggest that the Indian dugong populations are part of a single genetic cluster, comprising south Asia, northwest Indian ocean and southwest Indian ocean populations. Despite small population size, they retain high genetic diversity with unique mitochondrial DNA haplotypes within south Asia.

  3. Within India, novel haplotypes were observed from all sampling sites with overall high haplotype diversity (0.85±0.04) but low nucleotide diversity (0.005±0.001). Indian populations exhibit high genetic differentiation with higher within-population variance (63.41%) than among populations (36.59%), signaling population structure. Few haplotypes were shared with Sri Lanka and southeast Asian populations, indicating potential genetic connectivity.

  4. Being the most genetically unique population within south Asia, Indian dugong populations are globally significant. We recommend that Indian Dugong populations should be managed as a Conservation Unit to ensure population recovery and long-term survival of the species.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted December 16, 2019.
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Mitochondrial phylogeography reveals high diversity and unique divergent lineage in Indian Dugongs (Dugong dugon)
Yellapu Srinivas, Anant Pande, Swapnali Gole, P.V.R. Prem Jothi, K. Madhu Magesh, Sameeha Pathan, Sohini Dudhat, Rukmini Shekar, Devanshi Kukadia, Jeyaraj Antony Johnson, Samrat Mondol, Kuppusamy Sivakumar
bioRxiv 2019.12.16.877415; doi: https://doi.org/10.1101/2019.12.16.877415
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Mitochondrial phylogeography reveals high diversity and unique divergent lineage in Indian Dugongs (Dugong dugon)
Yellapu Srinivas, Anant Pande, Swapnali Gole, P.V.R. Prem Jothi, K. Madhu Magesh, Sameeha Pathan, Sohini Dudhat, Rukmini Shekar, Devanshi Kukadia, Jeyaraj Antony Johnson, Samrat Mondol, Kuppusamy Sivakumar
bioRxiv 2019.12.16.877415; doi: https://doi.org/10.1101/2019.12.16.877415

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