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Extensive Mammalian Germline Genome Engineering

Yanan Yue, Yinan Kan, Weihong Xu, Hong-Ye Zhao, Yixuan Zhou, Xiaobin Song, Jiajia Wu, Juan Xiong, Dharmendra Goswami, Meng Yang, Lydia Lamriben, Mengyuan Xu, Qi Zhang, Yu Luo, Jianxiong Guo, Shenyi Mao, Deling Jiao, Tien Dat Nguyen, Zhuo Li, Jacob V. Layer, Malin Li, Violette Paragas, Michele E. Youd, Zhongquan Sun, Yuan Ding, Weilin Wang, Hongwei Dou, Lingling Song, Xueqiong Wang, Lei Le, Xin Fang, Haydy George, Ranjith Anand, Shi Yun Wang, William F. Westlin, Marc Guell, James Markmann, Wenning Qin, Yangbin Gao, Hongjiang Wei, George M. Church, Luhan Yang
doi: https://doi.org/10.1101/2019.12.17.876862
Yanan Yue
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Yinan Kan
3eGenesis Inc., Cambridge, MA., USA
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Weihong Xu
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Hong-Ye Zhao
2Key Laboratory of Animal Gene Editing and Animal Cloning in Yunnan Province, Yunnan Agricultural University, Kunming, China
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Yixuan Zhou
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Xiaobin Song
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Jiajia Wu
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Juan Xiong
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Dharmendra Goswami
3eGenesis Inc., Cambridge, MA., USA
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Meng Yang
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Lydia Lamriben
3eGenesis Inc., Cambridge, MA., USA
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Mengyuan Xu
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Qi Zhang
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Yu Luo
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Jianxiong Guo
2Key Laboratory of Animal Gene Editing and Animal Cloning in Yunnan Province, Yunnan Agricultural University, Kunming, China
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Shenyi Mao
2Key Laboratory of Animal Gene Editing and Animal Cloning in Yunnan Province, Yunnan Agricultural University, Kunming, China
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Deling Jiao
2Key Laboratory of Animal Gene Editing and Animal Cloning in Yunnan Province, Yunnan Agricultural University, Kunming, China
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Tien Dat Nguyen
2Key Laboratory of Animal Gene Editing and Animal Cloning in Yunnan Province, Yunnan Agricultural University, Kunming, China
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Zhuo Li
2Key Laboratory of Animal Gene Editing and Animal Cloning in Yunnan Province, Yunnan Agricultural University, Kunming, China
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Jacob V. Layer
3eGenesis Inc., Cambridge, MA., USA
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Malin Li
3eGenesis Inc., Cambridge, MA., USA
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Violette Paragas
3eGenesis Inc., Cambridge, MA., USA
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Michele E. Youd
3eGenesis Inc., Cambridge, MA., USA
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Zhongquan Sun
5The Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
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Yuan Ding
5The Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
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Weilin Wang
5The Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
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Hongwei Dou
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Lingling Song
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Xueqiong Wang
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Lei Le
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Xin Fang
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Haydy George
3eGenesis Inc., Cambridge, MA., USA
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Ranjith Anand
3eGenesis Inc., Cambridge, MA., USA
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Shi Yun Wang
3eGenesis Inc., Cambridge, MA., USA
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William F. Westlin
3eGenesis Inc., Cambridge, MA., USA
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Marc Guell
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
3eGenesis Inc., Cambridge, MA., USA
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James Markmann
6Massachusetts General Hospital, MA., USA
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Wenning Qin
3eGenesis Inc., Cambridge, MA., USA
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Yangbin Gao
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
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Hongjiang Wei
2Key Laboratory of Animal Gene Editing and Animal Cloning in Yunnan Province, Yunnan Agricultural University, Kunming, China
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George M. Church
4Harvard University, Boston, MA., USA
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Luhan Yang
1Qihan Bio., Inc., Hangzhou, Zhejiang, China
3eGenesis Inc., Cambridge, MA., USA
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  • For correspondence: Luhan.yang@qihanbio.com
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ABSTRACT

Xenotransplantation, specifically the use of porcine organs for human transplantation, has long been sought after as an alternative for patients suffering from organ failure. However, clinical application of this approach has been impeded by two main hurdles: 1) risk of transmission of porcine endogenous retroviruses (PERVs) and 2) molecular incompatibilities between donor pigs and humans which culminate in rejection of the graft. We previously demonstrated that all 25 copies of the PERV elements in the pig genome could be inactivated and live pigs successfully generated. In this study, we improved the scale of porcine germline editing from targeting a single repetitive locus with CRISPR to engineering 18 different loci using multiple genome engineering methods. we engineered the pig genome at 42 alleles using CRISPR-Cas9 and transposon and produced PERVKO·3KO·9TG pigs which carry PERV inactivation, xeno-antigen KO and 9 effective human transgenes.. The engineered pigs exhibit normal physiology, fertility, and germline transmission of the edited alleles. In vitro assays demonstrated that these pigs gain significant resistance to human humoral and cell mediated damage, and coagulation dysregulations, similar to that of allotransplantation. Successful creation of PERVKO·3KO·9TG pigs represents a significant step forward towards safe and effective porcine xenotransplantation, which also represents a synthetic biology accomplishment of engineering novel functions in a living organism.

One Sentence Summary Extensive genome engineering is applied to modify pigs for safe and immune compatible organs for human transplantation

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Posted December 19, 2019.
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Extensive Mammalian Germline Genome Engineering
Yanan Yue, Yinan Kan, Weihong Xu, Hong-Ye Zhao, Yixuan Zhou, Xiaobin Song, Jiajia Wu, Juan Xiong, Dharmendra Goswami, Meng Yang, Lydia Lamriben, Mengyuan Xu, Qi Zhang, Yu Luo, Jianxiong Guo, Shenyi Mao, Deling Jiao, Tien Dat Nguyen, Zhuo Li, Jacob V. Layer, Malin Li, Violette Paragas, Michele E. Youd, Zhongquan Sun, Yuan Ding, Weilin Wang, Hongwei Dou, Lingling Song, Xueqiong Wang, Lei Le, Xin Fang, Haydy George, Ranjith Anand, Shi Yun Wang, William F. Westlin, Marc Guell, James Markmann, Wenning Qin, Yangbin Gao, Hongjiang Wei, George M. Church, Luhan Yang
bioRxiv 2019.12.17.876862; doi: https://doi.org/10.1101/2019.12.17.876862
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Extensive Mammalian Germline Genome Engineering
Yanan Yue, Yinan Kan, Weihong Xu, Hong-Ye Zhao, Yixuan Zhou, Xiaobin Song, Jiajia Wu, Juan Xiong, Dharmendra Goswami, Meng Yang, Lydia Lamriben, Mengyuan Xu, Qi Zhang, Yu Luo, Jianxiong Guo, Shenyi Mao, Deling Jiao, Tien Dat Nguyen, Zhuo Li, Jacob V. Layer, Malin Li, Violette Paragas, Michele E. Youd, Zhongquan Sun, Yuan Ding, Weilin Wang, Hongwei Dou, Lingling Song, Xueqiong Wang, Lei Le, Xin Fang, Haydy George, Ranjith Anand, Shi Yun Wang, William F. Westlin, Marc Guell, James Markmann, Wenning Qin, Yangbin Gao, Hongjiang Wei, George M. Church, Luhan Yang
bioRxiv 2019.12.17.876862; doi: https://doi.org/10.1101/2019.12.17.876862

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