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Regionally divergent drivers of historical diversification in the late Quaternary in a widely distributed generalist species, the common pheasant Phasianus colchicus

Simin Liu, View ORCID ProfileYang Liu, Edouard Jelen, Mansour Alibadian, Cheng-Te Yao, Xintong Li, Nasrin Kayvanfar, Yutao Wang, Farhad Vahidi, Jianlin Han, Gombobaatar Sundev, Zhengwang Zhang, Manuel Schweizer
doi: https://doi.org/10.1101/2019.12.21.881813
Simin Liu
1State Key Laboratory of Biocontrol, School of Life Sciences and Department of Ecology, Sun Yat-sen University, Guangzhou 510275, China
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Yang Liu
1State Key Laboratory of Biocontrol, School of Life Sciences and Department of Ecology, Sun Yat-sen University, Guangzhou 510275, China
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  • For correspondence: liuy353@mail.sysu.edu.cn
Edouard Jelen
2World Pheasant Association-France, Le sart 65 Rue Du Cornet Malo, 59660, Merville, France
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Mansour Alibadian
3Research Department of Zoological Innovation, Institute of Applied Zoology, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran
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Cheng-Te Yao
4Division of Zoology, Endemic Species Research Institute, Nantou, 55244, China
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Xintong Li
1State Key Laboratory of Biocontrol, School of Life Sciences and Department of Ecology, Sun Yat-sen University, Guangzhou 510275, China
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Nasrin Kayvanfar
3Research Department of Zoological Innovation, Institute of Applied Zoology, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran
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Yutao Wang
5School of Life and Geographic Science, Kashgar University, Kashgar 844006, China
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Farhad Vahidi
6Department of Genomics, Agricultural Biotechnology Research Institute of Iran-North Branch (ABRII), Rasht, Iran
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Jianlin Han
7CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China
8International Livestock Research Institute (ILRI), Nairobi 00100, Kenya
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Gombobaatar Sundev
9National University of Mongolia and Mongolian Ornithological Society, P. O. Box 537, Ulaanbaatar 210646A. Mongolia
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Zhengwang Zhang
10Key Laboratory for Biodiversity Sciences and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing 100875, China
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Manuel Schweizer
11Naturhistorisches Museum der Burgergemeinde Bern, Bernastrasse 15, CH-3005 Bern, Switzerland
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ABSTRACT

Aim Historical factors such as Pleistocene climate cycles and associated environmental changes have influenced the phylogeographic structure and demographic dynamics of many species. Resulting patterns not only depend on species’ life-history but also vary regionally. Consequently, different populations of species with large ranges over different biomes might have experienced divergent drivers of diversification and show different population histories. Such a representative species is the common pheasant Phasianus colchicus, an ecological generalist with a wide distribution in the Palearctic and at the edge of the Oriental region. We aimed at identifying distinct phylogeographic lineages of the common pheasant and investigating their evolutionary trajectories.

Study location Asia

Methods We used coalescent approaches to describe the phylogeographic structure and to reconstruct the spatio-temporal diversification and demographic history of the common pheasant based on a comprehensive geographic sampling of 265 individuals genotyped at seven nuclear and two mitochondrial loci.

Results The common pheasant diversified during the late Pleistocene into eight distinct evolutionary lineages which only partly correspond to traditional morphological groups. It originated at the edge of the Qinghai-Tibetan plateau and spread from there to East and Central Asia. Only the widely distributed genetically uniform lowland lineage of East Asia showed a recent range and population expansion, starting during last glacial. More phylogeographic structure was found elsewhere with lineages showing no signs of recent range expansions. One lineage of subtropical south-central China this is the result of long-term isolation in a climatically stable and topographically complex region. In others from arid Central Asia and China, demographic and range expansions were impeded by repeated population fragmentation during dry glacial and recent aridification. Given such a phylogeographic structure and demographic scenarios among lineages, we proposed split the range-wide common pheasant into three species.

Main conclusions Spatio-temporal phylogeographic frameworks of widespread species complexes such as the common pheasant provide valuable opportunities to identify regionally divergent drivers of diversification.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted December 23, 2019.
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Regionally divergent drivers of historical diversification in the late Quaternary in a widely distributed generalist species, the common pheasant Phasianus colchicus
Simin Liu, Yang Liu, Edouard Jelen, Mansour Alibadian, Cheng-Te Yao, Xintong Li, Nasrin Kayvanfar, Yutao Wang, Farhad Vahidi, Jianlin Han, Gombobaatar Sundev, Zhengwang Zhang, Manuel Schweizer
bioRxiv 2019.12.21.881813; doi: https://doi.org/10.1101/2019.12.21.881813
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Regionally divergent drivers of historical diversification in the late Quaternary in a widely distributed generalist species, the common pheasant Phasianus colchicus
Simin Liu, Yang Liu, Edouard Jelen, Mansour Alibadian, Cheng-Te Yao, Xintong Li, Nasrin Kayvanfar, Yutao Wang, Farhad Vahidi, Jianlin Han, Gombobaatar Sundev, Zhengwang Zhang, Manuel Schweizer
bioRxiv 2019.12.21.881813; doi: https://doi.org/10.1101/2019.12.21.881813

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