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ZEAMAP, a comprehensive database adapted to the maize multi-omics era

View ORCID ProfileSongtao Gui, Linfeng Yang, Jianbo Li, Jingyun Luo, Xiaokai Xu, Jianyu Yuan, Lu Chen, Wenqiang Li, Xin Yang, Shenshen Wu, Shuyan Li, Yuebin Wang, Yabing Zhu, Qiang Gao, Ning Yang, Jianbing Yan
doi: https://doi.org/10.1101/2020.01.04.894626
Songtao Gui
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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  • ORCID record for Songtao Gui
Linfeng Yang
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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Jianbo Li
2Beijing Genomics Institute-Shenzhen, Shenzhen 518083, China
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Jingyun Luo
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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Xiaokai Xu
2Beijing Genomics Institute-Shenzhen, Shenzhen 518083, China
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Jianyu Yuan
2Beijing Genomics Institute-Shenzhen, Shenzhen 518083, China
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Lu Chen
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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Wenqiang Li
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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Xin Yang
2Beijing Genomics Institute-Shenzhen, Shenzhen 518083, China
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Shenshen Wu
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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Shuyan Li
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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Yuebin Wang
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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Yabing Zhu
2Beijing Genomics Institute-Shenzhen, Shenzhen 518083, China
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Qiang Gao
2Beijing Genomics Institute-Shenzhen, Shenzhen 518083, China
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Ning Yang
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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  • For correspondence: yjianbing@mail.hzau.edu.cn yangningyingji@126.com
Jianbing Yan
1National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
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  • For correspondence: yjianbing@mail.hzau.edu.cn yangningyingji@126.com
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Abstract

As one of the most extensively cultivated crops, maize (Zea mays L.) has been extensively studied by researchers and breeders for over a century. With advances in high-throughput detection of various omics data, a wealth of multi-dimensional and multi-omics information has been accumulated for maize and its wild relative, teosinte. Integration of this information has the potential to accelerate genetic research and generate improvements in maize agronomic traits. To this end, we constructed ZEAMAP (http://www.zeamap.com), a comprehensive database incorporating multiple reference genomes, annotations, comparative genomics, transcriptomes, open chromatin regions, chromatin interactions, high-quality genetic variants, phenotypes, metabolomics, genetic maps, genetic mapping loci, population structures and domestication selection signals between teosinte and maize. ZEAMAP is user-friendly, with the ability to interactively integrate, visualize and cross-reference multiple different omics datasets.

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Posted January 08, 2020.
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ZEAMAP, a comprehensive database adapted to the maize multi-omics era
Songtao Gui, Linfeng Yang, Jianbo Li, Jingyun Luo, Xiaokai Xu, Jianyu Yuan, Lu Chen, Wenqiang Li, Xin Yang, Shenshen Wu, Shuyan Li, Yuebin Wang, Yabing Zhu, Qiang Gao, Ning Yang, Jianbing Yan
bioRxiv 2020.01.04.894626; doi: https://doi.org/10.1101/2020.01.04.894626
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ZEAMAP, a comprehensive database adapted to the maize multi-omics era
Songtao Gui, Linfeng Yang, Jianbo Li, Jingyun Luo, Xiaokai Xu, Jianyu Yuan, Lu Chen, Wenqiang Li, Xin Yang, Shenshen Wu, Shuyan Li, Yuebin Wang, Yabing Zhu, Qiang Gao, Ning Yang, Jianbing Yan
bioRxiv 2020.01.04.894626; doi: https://doi.org/10.1101/2020.01.04.894626

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