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InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains

Matthew R. Olm, Alexander Crits-Christoph, Keith Bouma-Gregson, Brian Firek, Michael J. Morowitz, Jillian F. Banfield
doi: https://doi.org/10.1101/2020.01.22.915579
Matthew R. Olm
1Department of Earth and Planetary Science, University of California, Berkeley, CA, USA
2Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
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Alexander Crits-Christoph
2Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
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Keith Bouma-Gregson
3Office of Information Management and Analysis, California State Water Resources Control Board, Sacramento, CA, USA
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Brian Firek
4Department of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
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Michael J. Morowitz
4Department of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
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Jillian F. Banfield
1Department of Earth and Planetary Science, University of California, Berkeley, CA, USA
5Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, USA
6Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
7Chan Zuckerberg Biohub, San Francisco, CA, USA.
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  • For correspondence: jbanfield@berkeley.edu
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Article Information

doi 
https://doi.org/10.1101/2020.01.22.915579
History 
  • January 23, 2020.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. Matthew R. Olm1,2,
  2. Alexander Crits-Christoph2,
  3. Keith Bouma-Gregson3,
  4. Brian Firek4,
  5. Michael J. Morowitz4 and
  6. Jillian F. Banfield1,5,6,7,✢
  1. 1Department of Earth and Planetary Science, University of California, Berkeley, CA, USA
  2. 2Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
  3. 3Office of Information Management and Analysis, California State Water Resources Control Board, Sacramento, CA, USA
  4. 4Department of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
  5. 5Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA, USA
  6. 6Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
  7. 7Chan Zuckerberg Biohub, San Francisco, CA, USA.
  1. ↵✢Corresponding author: jbanfield{at}berkeley.edu
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Posted January 23, 2020.
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InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains
Matthew R. Olm, Alexander Crits-Christoph, Keith Bouma-Gregson, Brian Firek, Michael J. Morowitz, Jillian F. Banfield
bioRxiv 2020.01.22.915579; doi: https://doi.org/10.1101/2020.01.22.915579
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InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains
Matthew R. Olm, Alexander Crits-Christoph, Keith Bouma-Gregson, Brian Firek, Michael J. Morowitz, Jillian F. Banfield
bioRxiv 2020.01.22.915579; doi: https://doi.org/10.1101/2020.01.22.915579

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