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Domestication reprogrammed the budding yeast life cycle

Matteo De Chiara, View ORCID ProfileBenjamin Barré, Karl Persson, Amadi Onyetuga Chioma, Agurtzane Irizar, Joseph Schacherer, Jonas Warringer, Gianni Liti
doi: https://doi.org/10.1101/2020.02.08.939314
Matteo De Chiara
1Université Côte d’Azur, CNRS, INSERM, IRCAN, Nice, France
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  • For correspondence: matteo.de-chiara@univ-cotedazur.fr jonas.warringer@cmb.gu.se gianni.liti@univ-cotedazur.fr
Benjamin Barré
1Université Côte d’Azur, CNRS, INSERM, IRCAN, Nice, France
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Karl Persson
2Department of Chemistry and Molecular Biology, Gothenburg University, Gothenburg, Sweden
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Amadi Onyetuga Chioma
2Department of Chemistry and Molecular Biology, Gothenburg University, Gothenburg, Sweden
3Department of Microbiology, University of Nigeria, Nsukka, Nigeria
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Agurtzane Irizar
1Université Côte d’Azur, CNRS, INSERM, IRCAN, Nice, France
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Joseph Schacherer
4Université de Strasbourg, CNRS, GMGM UMR 7156, Strasbourg, France
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Jonas Warringer
2Department of Chemistry and Molecular Biology, Gothenburg University, Gothenburg, Sweden
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  • For correspondence: matteo.de-chiara@univ-cotedazur.fr jonas.warringer@cmb.gu.se gianni.liti@univ-cotedazur.fr
Gianni Liti
1Université Côte d’Azur, CNRS, INSERM, IRCAN, Nice, France
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  • For correspondence: matteo.de-chiara@univ-cotedazur.fr jonas.warringer@cmb.gu.se gianni.liti@univ-cotedazur.fr
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Abstract

Domestication of plants and animals is the foundation for feeding the world population. We report that domestication of the model yeast S. cerevisiae reprogrammed its life cycle entirely. We tracked growth, gamete formation and cell survival across many environments for nearly 1000 genome sequenced isolates and found a remarkable dichotomy between domesticated and wild yeasts. Wild yeasts near uniformly trigger meiosis and sporulate when encountering nutrient depletions, whereas domestication relaxed selection on sexual reproduction and favoured survival as quiescent cells. Domestication also systematically enhanced fermentative over respiratory traits while decreasing stress tolerance. We show that this yeast domestication syndrome was driven by aneuploidies and gene function losses that emerged independently in multiple domesticated lineages during the specie’s recent evolutionary history. We found domestication to be the most dramatic event in budding yeast evolution, raising questions on how much domestication has distorted our understanding of this key model species.

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  • ↵‡ These authors jointly supervised this work.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 13, 2020.
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Domestication reprogrammed the budding yeast life cycle
Matteo De Chiara, Benjamin Barré, Karl Persson, Amadi Onyetuga Chioma, Agurtzane Irizar, Joseph Schacherer, Jonas Warringer, Gianni Liti
bioRxiv 2020.02.08.939314; doi: https://doi.org/10.1101/2020.02.08.939314
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Domestication reprogrammed the budding yeast life cycle
Matteo De Chiara, Benjamin Barré, Karl Persson, Amadi Onyetuga Chioma, Agurtzane Irizar, Joseph Schacherer, Jonas Warringer, Gianni Liti
bioRxiv 2020.02.08.939314; doi: https://doi.org/10.1101/2020.02.08.939314

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