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A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae

Eline D. Postma, Sofia Dashko, Lars van Breemen, Shannara K. Taylor Parkins, Marcel van den Broek, View ORCID ProfileJean-Marc Daran, View ORCID ProfilePascale Daran-Lapujade
doi: https://doi.org/10.1101/2020.02.18.954131
Eline D. Postma
1Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2627HZ Delft, The Netherlands
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Sofia Dashko
1Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2627HZ Delft, The Netherlands
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Lars van Breemen
1Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2627HZ Delft, The Netherlands
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Shannara K. Taylor Parkins
1Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2627HZ Delft, The Netherlands
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Marcel van den Broek
1Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2627HZ Delft, The Netherlands
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Jean-Marc Daran
1Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2627HZ Delft, The Netherlands
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  • ORCID record for Jean-Marc Daran
Pascale Daran-Lapujade
1Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2627HZ Delft, The Netherlands
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  • ORCID record for Pascale Daran-Lapujade
  • For correspondence: p.a.s.daran-lapujade@tudelft.nl
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ABSTRACT

The construction of microbial cell factories for sustainable production of chemicals and pharmaceuticals requires extensive genome engineering. Using Saccharomyces cerevisiae, this study proposes Synthetic Chromosomes (SynChs) as orthogonal expression platforms for rewiring native cellular processes and implementing new functionalities. Capitalizing the powerful homologous recombination capability of S. cerevisiae, modular SynChs of 50 and 100 Kb were fully assembled de novo from up to 44 transcriptional-unit-sized fragments in a single transformation. These assemblies were remarkably efficient and faithful to their in silico design. SynChs made of non-coding DNA were stably replicated and segregated irrespective of their size without affecting the physiology of their host. These non-coding SynChs were successfully used as landing pad and as exclusive expression platform for the essential glycolytic pathway. This work pushes the limit of DNA assembly in S. cerevisiae and paves the way for de novo designer chromosomes as modular genome engineering platforms in S. cerevisiae.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 19, 2020.
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A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae
Eline D. Postma, Sofia Dashko, Lars van Breemen, Shannara K. Taylor Parkins, Marcel van den Broek, Jean-Marc Daran, Pascale Daran-Lapujade
bioRxiv 2020.02.18.954131; doi: https://doi.org/10.1101/2020.02.18.954131
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A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae
Eline D. Postma, Sofia Dashko, Lars van Breemen, Shannara K. Taylor Parkins, Marcel van den Broek, Jean-Marc Daran, Pascale Daran-Lapujade
bioRxiv 2020.02.18.954131; doi: https://doi.org/10.1101/2020.02.18.954131

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