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Rtrack: a software package for reproducible automated water maze analysis

View ORCID ProfileRupert W Overall, View ORCID ProfileSara Zocher, Alexander Garthe, View ORCID ProfileGerd Kempermann
doi: https://doi.org/10.1101/2020.02.27.967372
Rupert W Overall
1CRTD – Center for Regenerative Therapies Dresden, Technische Universität Dresden, 01307 Dresden, Germany
2DZNE, German Center for Neurodegenerative Diseases, 01307 Dresden, Germany
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  • ORCID record for Rupert W Overall
  • For correspondence: rupert.overall@dzne.de
Sara Zocher
1CRTD – Center for Regenerative Therapies Dresden, Technische Universität Dresden, 01307 Dresden, Germany
2DZNE, German Center for Neurodegenerative Diseases, 01307 Dresden, Germany
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Alexander Garthe
1CRTD – Center for Regenerative Therapies Dresden, Technische Universität Dresden, 01307 Dresden, Germany
2DZNE, German Center for Neurodegenerative Diseases, 01307 Dresden, Germany
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Gerd Kempermann
1CRTD – Center for Regenerative Therapies Dresden, Technische Universität Dresden, 01307 Dresden, Germany
2DZNE, German Center for Neurodegenerative Diseases, 01307 Dresden, Germany
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Summary

Rtrack is an open-source software package for the analysis of spatial exploration data from behavioural tests such as the Morris water maze. The software provides an easy-to-use interface for data import, analysis and visualisation. A parameter-free machine learning model allows rapid and reproducible classification of spatial search strategies. We also propose a standard export format to enable cross-platform data sharing for the first time in the field.

Footnotes

  • https://rupertoverall.net/Rtrack/

  • https://cran.r-project.org/package=Rtrack

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 27, 2020.
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Rtrack: a software package for reproducible automated water maze analysis
Rupert W Overall, Sara Zocher, Alexander Garthe, Gerd Kempermann
bioRxiv 2020.02.27.967372; doi: https://doi.org/10.1101/2020.02.27.967372
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Rtrack: a software package for reproducible automated water maze analysis
Rupert W Overall, Sara Zocher, Alexander Garthe, Gerd Kempermann
bioRxiv 2020.02.27.967372; doi: https://doi.org/10.1101/2020.02.27.967372

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