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Widefield light sheet microscopy using an Airy beam combined with deep-learning super-resolution

View ORCID ProfileStella Corsetti, View ORCID ProfilePhilip Wijesinghe, Persephone B. Poulton, View ORCID ProfileShuzo Sakata, View ORCID ProfileKhushi Vyas, C. Simon Herrington, View ORCID ProfileJonathan Nylk, View ORCID ProfileFederico Gasparoli, View ORCID ProfileKishan Dholakia
doi: https://doi.org/10.1101/2020.02.27.967547
Stella Corsetti
1SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh, St Andrews, Fife, KY16 9SS, UK
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Philip Wijesinghe
1SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh, St Andrews, Fife, KY16 9SS, UK
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Persephone B. Poulton
1SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh, St Andrews, Fife, KY16 9SS, UK
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Shuzo Sakata
2Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, G4 0RE, UK
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Khushi Vyas
3Hamlyn Centre for Robotic Surgery, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
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C. Simon Herrington
4Nicola Murray Centre for Ovarian Cancer Research and Edinburgh Pathology, Cancer Research UK Edinburgh Centre, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, EH4 2XR, UK
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Jonathan Nylk
1SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh, St Andrews, Fife, KY16 9SS, UK
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Federico Gasparoli
1SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh, St Andrews, Fife, KY16 9SS, UK
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Kishan Dholakia
1SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh, St Andrews, Fife, KY16 9SS, UK
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Abstract

Imaging across length scales and in depth has been an important pursuit of widefield optical imaging. This promises to reveal fine cellular detail within a widefield snapshot of a tissue sample. Current advances often sacrifice resolution through selective sub-sampling to provide a wide field of view in a reasonable time scale. We demonstrate a new avenue for recovering high-resolution images from sub-sampled data in light-sheet microscopy using deep-learning super-resolution. We combine this with the use of a widefield Airy beam to achieve high-resolution imaging over extended fields of view and depths. We characterise our method on fluorescent beads as test targets. We then demonstrate improvements in imaging amyloid plaques in a cleared brain from a mouse model of Alzheimer’s disease, and in excised healthy and cancerous colon and breast tissues. This development can be widely applied in all forms of light sheet microscopy to provide a two-fold increase in the dynamic range of the imaged length scale. It has the potential to provide further insight into neuroscience, developmental biology and histopathology.

Footnotes

  • ↵* sc337{at}st-andrews.ac.uk, kd1{at}st-andrews.ac.uk

  • https://doi.org/10.17630/7cee889f-aa36-4c27-a485-262c8a5d336b

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted April 04, 2020.
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Widefield light sheet microscopy using an Airy beam combined with deep-learning super-resolution
Stella Corsetti, Philip Wijesinghe, Persephone B. Poulton, Shuzo Sakata, Khushi Vyas, C. Simon Herrington, Jonathan Nylk, Federico Gasparoli, Kishan Dholakia
bioRxiv 2020.02.27.967547; doi: https://doi.org/10.1101/2020.02.27.967547
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Widefield light sheet microscopy using an Airy beam combined with deep-learning super-resolution
Stella Corsetti, Philip Wijesinghe, Persephone B. Poulton, Shuzo Sakata, Khushi Vyas, C. Simon Herrington, Jonathan Nylk, Federico Gasparoli, Kishan Dholakia
bioRxiv 2020.02.27.967547; doi: https://doi.org/10.1101/2020.02.27.967547

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