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Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data

View ORCID ProfileAndreas Tjärnberg, Omar Mahmood, View ORCID ProfileChristopher A Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel A Christiaen, Richard A Bonneau
doi: https://doi.org/10.1101/2020.02.28.970202
Andreas Tjärnberg
1Center for Developmental Genetics, New York University, New York 10003 NY, USA
2Center For Genomics and Systems Biology, NYU, New York, NY 10008, USA
3Department of Biology, NYU, New York, NY 10008, USA
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  • ORCID record for Andreas Tjärnberg
  • For correspondence: at145@nyu.edu rb133@nyu.edu
Omar Mahmood
5Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, NY 10003, USA
6Center For Data Science, NYU, New York, NY 10008, USA
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Christopher A Jackson
2Center For Genomics and Systems Biology, NYU, New York, NY 10008, USA
3Department of Biology, NYU, New York, NY 10008, USA
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  • ORCID record for Christopher A Jackson
Giuseppe-Antonio Saldi
2Center For Genomics and Systems Biology, NYU, New York, NY 10008, USA
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Kyunghyun Cho
5Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, NY 10003, USA
6Center For Data Science, NYU, New York, NY 10008, USA
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Lionel A Christiaen
1Center for Developmental Genetics, New York University, New York 10003 NY, USA
3Department of Biology, NYU, New York, NY 10008, USA
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Richard A Bonneau
2Center For Genomics and Systems Biology, NYU, New York, NY 10008, USA
3Department of Biology, NYU, New York, NY 10008, USA
4Flatiron Institute, Center for Computational Biology, Simons Foundation, New York, NY 10010, USA
5Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, NY 10003, USA
6Center For Data Science, NYU, New York, NY 10008, USA
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  • For correspondence: at145@nyu.edu rb133@nyu.edu
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Posted March 02, 2020.
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Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data
Andreas Tjärnberg, Omar Mahmood, Christopher A Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel A Christiaen, Richard A Bonneau
bioRxiv 2020.02.28.970202; doi: https://doi.org/10.1101/2020.02.28.970202
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Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data
Andreas Tjärnberg, Omar Mahmood, Christopher A Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel A Christiaen, Richard A Bonneau
bioRxiv 2020.02.28.970202; doi: https://doi.org/10.1101/2020.02.28.970202

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