Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data

Andreas Tjärnberg; Omar Mahmood; Christopher A Jackson; Giuseppe-Antonio Saldi; Kyunghyun Cho; Lionel A Christiaen; Richard A Bonneau

doi:10.1101/2020.02.28.970202

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Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data

View ORCID ProfileAndreas Tjärnberg, Omar Mahmood, View ORCID ProfileChristopher A Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel A Christiaen, Richard A Bonneau

doi: https://doi.org/10.1101/2020.02.28.970202

Andreas Tjärnberg

1Center for Developmental Genetics, New York University, New York 10003 NY, USA

2Center For Genomics and Systems Biology, NYU, New York, NY 10008, USA

3Department of Biology, NYU, New York, NY 10008, USA

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ORCID record for Andreas Tjärnberg
For correspondence: at145@nyu.edu rb133@nyu.edu

Omar Mahmood

5Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, NY 10003, USA

6Center For Data Science, NYU, New York, NY 10008, USA

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Christopher A Jackson

2Center For Genomics and Systems Biology, NYU, New York, NY 10008, USA

3Department of Biology, NYU, New York, NY 10008, USA

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ORCID record for Christopher A Jackson

Giuseppe-Antonio Saldi

2Center For Genomics and Systems Biology, NYU, New York, NY 10008, USA

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Kyunghyun Cho

5Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, NY 10003, USA

6Center For Data Science, NYU, New York, NY 10008, USA

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Lionel A Christiaen

1Center for Developmental Genetics, New York University, New York 10003 NY, USA

3Department of Biology, NYU, New York, NY 10008, USA

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Richard A Bonneau

2Center For Genomics and Systems Biology, NYU, New York, NY 10008, USA

3Department of Biology, NYU, New York, NY 10008, USA

4Flatiron Institute, Center for Computational Biology, Simons Foundation, New York, NY 10010, USA

5Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, NY 10003, USA

6Center For Data Science, NYU, New York, NY 10008, USA

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For correspondence: at145@nyu.edu rb133@nyu.edu

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Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data

Andreas Tjärnberg, Omar Mahmood, Christopher A Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel A Christiaen, Richard A Bonneau

bioRxiv 2020.02.28.970202; doi: https://doi.org/10.1101/2020.02.28.970202

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Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data

Andreas Tjärnberg, Omar Mahmood, Christopher A Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel A Christiaen, Richard A Bonneau

bioRxiv 2020.02.28.970202; doi: https://doi.org/10.1101/2020.02.28.970202

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