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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
View ORCID ProfileZizhen Yao, View ORCID ProfileHanqing Liu, View ORCID ProfileFangming Xie, View ORCID ProfileStephan Fischer, View ORCID ProfileA. Sina Booeshaghi, View ORCID ProfileRicky S Adkins, View ORCID ProfileAndrew I. Aldridge, View ORCID ProfileSeth A. Ament, View ORCID ProfileAntonio Pinto-Duarte, View ORCID ProfileAnna Bartlett, View ORCID ProfileM. Margarita Behrens, View ORCID ProfileKoen Van den Berge, View ORCID ProfileDarren Bertagnolli, View ORCID ProfileTommaso Biancalani, View ORCID ProfileHéctor Corrada Bravo, View ORCID ProfileTamara Casper, View ORCID ProfileCarlo Colantuoni, View ORCID ProfileHeather Creasy, View ORCID ProfileKirsten Crichton, View ORCID ProfileMegan Crow, View ORCID ProfileNick Dee, View ORCID ProfileElizabeth L Dougherty, View ORCID ProfileWayne I. Doyle, View ORCID ProfileSandrine Dudoit, View ORCID ProfileRongxin Fang, View ORCID ProfileVictor Felix, View ORCID ProfileOlivia Fong, View ORCID ProfileMichelle Giglio, View ORCID ProfileJeff Goldy, View ORCID ProfileMike Hawrylycz, View ORCID ProfileHector Roux de Bézieux, View ORCID ProfileBrian R. Herb, View ORCID ProfileRonna Hertzano, View ORCID ProfileXiaomeng Hou, View ORCID ProfileQiwen Hu, Jonathan Crabtree, View ORCID ProfileJayaram Kancherla, View ORCID ProfileMatthew Kroll, View ORCID ProfileKanan Lathia, View ORCID ProfileYang Eric Li, View ORCID ProfileJacinta D. Lucero, View ORCID ProfileChongyuan Luo, View ORCID ProfileAnup Mahurkar, View ORCID ProfileDelissa McMillen, View ORCID ProfileNaeem Nadaf, View ORCID ProfileJoseph R. Nery, View ORCID ProfileSheng-Yong Niu, View ORCID ProfileJoshua Orvis, View ORCID ProfileJulia K. Osteen, View ORCID ProfileThanh Pham, View ORCID ProfileOlivier Poirion, View ORCID ProfileSebastian Preissl, View ORCID ProfileElizabeth Purdom, View ORCID ProfileChristine Rimorin, View ORCID ProfileDavide Risso, View ORCID ProfileAngeline C. Rivkin, View ORCID ProfileKimberly Smith, View ORCID ProfileKelly Street, View ORCID ProfileJosef Sulc, View ORCID ProfileThuc Nghi Nguyen, View ORCID ProfileMichael Tieu, View ORCID ProfileAmy Torkelson, View ORCID ProfileHerman Tung, View ORCID ProfileEeshit Dhaval Vaishnav, View ORCID ProfileValentine Svensson, View ORCID ProfileCharles R. Vanderburg, View ORCID ProfileVasilis Ntranos, View ORCID ProfileCindy van Velthoven, View ORCID ProfileXinxin Wang, View ORCID ProfileOwen R. White, View ORCID ProfileZ. Josh Huang, View ORCID ProfilePeter V. Kharchenko, View ORCID ProfileLior Pachter, View ORCID ProfileJohn Ngai, View ORCID ProfileAviv Regev, View ORCID ProfileBosiljka Tasic, View ORCID ProfileJoshua D. Welch, View ORCID ProfileJesse Gillis, View ORCID ProfileEvan Z. Macosko, View ORCID ProfileBing Ren, View ORCID ProfileJoseph R. Ecker, View ORCID ProfileHongkui Zeng, View ORCID ProfileEran A. Mukamel
doi: https://doi.org/10.1101/2020.02.29.970558
Zizhen Yao
1Allen Institute for Brain Science, Seattle, WA, 98109
Hanqing Liu
2Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, 92037
Fangming Xie
3Dept. of Physics, University of California, San Diego, La Jolla, CA 92037
Stephan Fischer
4Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York, 11724
A. Sina Booeshaghi
10California Institute of Technology, Pasadena, CA 91125
Ricky S Adkins
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Andrew I. Aldridge
6Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037; Howard Hughes Medical Institute, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Road, La Jolla, CA 92037
Seth A. Ament
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Antonio Pinto-Duarte
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Anna Bartlett
2Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, 92037
M. Margarita Behrens
7Computational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, 92037
Koen Van den Berge
8Department of Statistics, University of California, Berkeley, Berkeley, CA, 94720; Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Gent, Belgium
Darren Bertagnolli
1Allen Institute for Brain Science, Seattle, WA, 98109
Tommaso Biancalani
9Broad Institute of MIT and Harvard, Cambridge, MA 02142
Héctor Corrada Bravo
11Center for Bioinformatics and Computational Biology, University of Maryland, College Park. College Park, MD, 20742.
Tamara Casper
1Allen Institute for Brain Science, Seattle, WA, 98109
Carlo Colantuoni
12Johns Hopkins School of Medicine, Dept. Neurology & Dept. Neuroscience, and Univesity of Maryland School of Medicine, Institute for Genome Sciences Baltimore MD 21205
Heather Creasy
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Kirsten Crichton
1Allen Institute for Brain Science, Seattle, WA, 98109
Megan Crow
13Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory
Nick Dee
1Allen Institute for Brain Science, Seattle, WA, 98109
Elizabeth L Dougherty
9Broad Institute of MIT and Harvard, Cambridge, MA 02142
Wayne I. Doyle
14Dept. of Cognitive Science, University of California, San Diego, La Jolla, CA 92037
Sandrine Dudoit
15Department of Statistics, University of California, Berkeley
Rongxin Fang
16Bioinformatics and Systems Biology Graduate Program, UC San Diego
Victor Felix
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Olivia Fong
1Allen Institute for Brain Science, Seattle, WA, 98109
Michelle Giglio
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Jeff Goldy
1Allen Institute for Brain Science, Seattle, WA, 98109
Mike Hawrylycz
1Allen Institute for Brain Science, Seattle, WA, 98109
Hector Roux de Bézieux
17Division of Biostatistics, School of Public Health, University of California, Berkeley, CA, USA
Brian R. Herb
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Ronna Hertzano
18Department of Otorhinolaryngology, Anatomy and Neurobiology and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore
Xiaomeng Hou
19Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego School of Medicine, La Jolla, CA, USA.
Qiwen Hu
20Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
Jonathan Crabtree
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Jayaram Kancherla
11Center for Bioinformatics and Computational Biology, University of Maryland, College Park. College Park, MD, 20742.
Matthew Kroll
1Allen Institute for Brain Science, Seattle, WA, 98109
Kanan Lathia
1Allen Institute for Brain Science, Seattle, WA, 98109
Yang Eric Li
22Ludwig Institute for Cancer Research, 9500 Gilman Drive, La Jolla, CA 92093, USA
Jacinta D. Lucero
7Computational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, 92037
Chongyuan Luo
23Department of Human Genetics, University of California Los Angeles
Anup Mahurkar
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Delissa McMillen
1Allen Institute for Brain Science, Seattle, WA, 98109
Naeem Nadaf
9Broad Institute of MIT and Harvard, Cambridge, MA 02142
Joseph R. Nery
2Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, 92037
Sheng-Yong Niu
Joshua Orvis
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Julia K. Osteen
7Computational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, 92037
Thanh Pham
1Allen Institute for Brain Science, Seattle, WA, 98109
Olivier Poirion
19Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego School of Medicine, La Jolla, CA, USA.
Sebastian Preissl
19Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego School of Medicine, La Jolla, CA, USA.
Elizabeth Purdom
15Department of Statistics, University of California, Berkeley
Christine Rimorin
1Allen Institute for Brain Science, Seattle, WA, 98109
Davide Risso
26Dept. of Statistical Sciences, University of Padova, Italy
Angeline C. Rivkin
6Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037; Howard Hughes Medical Institute, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Road, La Jolla, CA 92037
Kimberly Smith
1Allen Institute for Brain Science, Seattle, WA, 98109
Kelly Street
27Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, 02215
Josef Sulc
1Allen Institute for Brain Science, Seattle, WA, 98109
Thuc Nghi Nguyen
1Allen Institute for Brain Science, Seattle, WA, 98109
Michael Tieu
1Allen Institute for Brain Science, Seattle, WA, 98109
Amy Torkelson
1Allen Institute for Brain Science, Seattle, WA, 98109
Herman Tung
1Allen Institute for Brain Science, Seattle, WA, 98109
Eeshit Dhaval Vaishnav
9Broad Institute of MIT and Harvard, Cambridge, MA 02142
Valentine Svensson
10California Institute of Technology, Pasadena, CA 91125
Charles R. Vanderburg
9Broad Institute of MIT and Harvard, Cambridge, MA 02142
Vasilis Ntranos
25UCSF
Cindy van Velthoven
1Allen Institute for Brain Science, Seattle, WA, 98109
Xinxin Wang
28Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego School of Medicine, La Jolla, CA, USA. Current affiliation: McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA
Owen R. White
5Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD
Z. Josh Huang
21Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724
Peter V. Kharchenko
20Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
Lior Pachter
10California Institute of Technology, Pasadena, CA 91125
John Ngai
29Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720
Aviv Regev
30Broad Institute of MIT and Harvard, Cambridge, MA 02142, Howard Hughes Medical Institute, Department of Biology, MIT, Cambridge MA 02140
Bosiljka Tasic
1Allen Institute for Brain Science, Seattle, WA, 98109
Joshua D. Welch
31Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109
Jesse Gillis
4Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York, 11724
Evan Z. Macosko
32Broad Institute
Bing Ren
33Center for Epigenomics, Department of Cellular and Molecular Medicine, UC San Diego; Ludwig Institute for Cancer Research
Joseph R. Ecker
6Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037; Howard Hughes Medical Institute, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Road, La Jolla, CA 92037
Hongkui Zeng
1Allen Institute for Brain Science, Seattle, WA, 98109
Eran A. Mukamel
14Dept. of Cognitive Science, University of California, San Diego, La Jolla, CA 92037
Article usage
Posted March 05, 2020.
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S Adkins, Andrew I. Aldridge, Seth A. Ament, Antonio Pinto-Duarte, Anna Bartlett, M. Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Tommaso Biancalani, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Heather Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L Dougherty, Wayne I. Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle Giglio, Jeff Goldy, Mike Hawrylycz, Hector Roux de Bézieux, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jonathan Crabtree, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta D. Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem Nadaf, Joseph R. Nery, Sheng-Yong Niu, Joshua Orvis, Julia K. Osteen, Thanh Pham, Olivier Poirion, Sebastian Preissl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline C. Rivkin, Kimberly Smith, Kelly Street, Josef Sulc, Thuc Nghi Nguyen, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Valentine Svensson, Charles R. Vanderburg, Vasilis Ntranos, Cindy van Velthoven, Xinxin Wang, Owen R. White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel
bioRxiv 2020.02.29.970558; doi: https://doi.org/10.1101/2020.02.29.970558
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S Adkins, Andrew I. Aldridge, Seth A. Ament, Antonio Pinto-Duarte, Anna Bartlett, M. Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Tommaso Biancalani, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Heather Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L Dougherty, Wayne I. Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle Giglio, Jeff Goldy, Mike Hawrylycz, Hector Roux de Bézieux, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jonathan Crabtree, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta D. Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem Nadaf, Joseph R. Nery, Sheng-Yong Niu, Joshua Orvis, Julia K. Osteen, Thanh Pham, Olivier Poirion, Sebastian Preissl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline C. Rivkin, Kimberly Smith, Kelly Street, Josef Sulc, Thuc Nghi Nguyen, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Valentine Svensson, Charles R. Vanderburg, Vasilis Ntranos, Cindy van Velthoven, Xinxin Wang, Owen R. White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel
bioRxiv 2020.02.29.970558; doi: https://doi.org/10.1101/2020.02.29.970558
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