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Tracking the outbreak. An optimized delimiting survey strategy for Xylella fastidiosa

View ORCID ProfileE. Lázaro, M. Sesé, View ORCID ProfileA. López-Quílez, View ORCID ProfileD. Conesa, V. Dalmau, A. Ferrer-Matoses, View ORCID ProfileA. Vicent
doi: https://doi.org/10.1101/2020.03.05.978668
E. Lázaro
1Centre de Protecció Vegetal i Biotecnologia, Institut Valencià d’Investigacions Agràries (IVIA), Moncada, Spain
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M. Sesé
1Centre de Protecció Vegetal i Biotecnologia, Institut Valencià d’Investigacions Agràries (IVIA), Moncada, Spain
2Departament d’Estadística e Investigació Operativa, Universitat de València, València, Spain
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A. López-Quílez
2Departament d’Estadística e Investigació Operativa, Universitat de València, València, Spain
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D. Conesa
2Departament d’Estadística e Investigació Operativa, Universitat de València, València, Spain
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V. Dalmau
3Servei de Sanitat Vegetal, Conselleria d’Agricultura, Desenvolupament Rural, Emergència Climàtica i Transició Ecológica, Generalitat Valenciana, Silla, Spain
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A. Ferrer-Matoses
3Servei de Sanitat Vegetal, Conselleria d’Agricultura, Desenvolupament Rural, Emergència Climàtica i Transició Ecológica, Generalitat Valenciana, Silla, Spain
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A. Vicent
1Centre de Protecció Vegetal i Biotecnologia, Institut Valencià d’Investigacions Agràries (IVIA), Moncada, Spain
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Summary

  • Current legislation enforces the implementation of intensive surveillance programs for quarantine plant pathogens. After an outbreak, surveys are implemented to delimit the geographic extent of the pathogen and execute disease control. The feasibility of control programs is highly dependent on budget availability, thus it is necessary to target and optimize surveillance strategies.

  • A sequential adaptive delimiting survey involving a three-phase and a two-phase design with increasing spatial resolution was developed and implemented for the Xylella fastidiosa outbreak in Alicante, Spain. Inspection and sampling intensities were optimized using simulation-based methods and results were validated using Bayesian spatial models.

  • This strategy made it possible to sequence inspection and sampling considering different spatial resolutions, and to adapt the inspection and sampling intensity according to the information obtained in the previous, coarser, spatial resolution.

  • The proposed strategy was able to delimit efficiently the extent of Xf improving efficiency of the current in terms of survey efforts. From a methodological perspective, our approach provides new insights of alternative delimiting designs and new reference sampling intensity values.

Footnotes

  • New section "Data and Code availability" has been added to indicate the url direction in which data and code are published to reproduce manuscript analyses; New section "Supplementary Material" has beed added to list all Figures and Tables showed in the Supplementary Material tab.

  • https://bitbucket.org/elaher/xylellafastidiosa_reproducibleresearch/src

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 06, 2020.
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Tracking the outbreak. An optimized delimiting survey strategy for Xylella fastidiosa
E. Lázaro, M. Sesé, A. López-Quílez, D. Conesa, V. Dalmau, A. Ferrer-Matoses, A. Vicent
bioRxiv 2020.03.05.978668; doi: https://doi.org/10.1101/2020.03.05.978668
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Tracking the outbreak. An optimized delimiting survey strategy for Xylella fastidiosa
E. Lázaro, M. Sesé, A. López-Quílez, D. Conesa, V. Dalmau, A. Ferrer-Matoses, A. Vicent
bioRxiv 2020.03.05.978668; doi: https://doi.org/10.1101/2020.03.05.978668

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