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Multiplexed photo-activation of mRNA with single-cell resolution

View ORCID ProfileDongyang Zhang, Shuaijiang Jin, Xijun Piao, View ORCID ProfileNeal K. Devaraj
doi: https://doi.org/10.1101/2020.03.19.999631
Dongyang Zhang
1University of California San Diego
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Shuaijiang Jin
2University of California, San Diego
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Xijun Piao
2University of California, San Diego
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Neal K. Devaraj
2University of California, San Diego
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  • For correspondence: ndevaraj@ucsd.edu
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ABSTRACT

We demonstrate sequential optical activation of two types of mRNAs in the same mammalian cell through the sequential photocleavage of small molecule caging groups (‘photo-cages’) tethered to the 5′ untranslated region (5′-UTR) of an mRNA. Synthetic ‘photo-cages’ were conjugated onto target mRNA using RNA-TAG, an enzymatic site-specific RNA modification technique. Translation of mRNA was severely reduced upon conjugation of the ‘photo-cages’ onto the 5′-UTR. However, subsequent photo-release of the ‘cages’ from the mRNA transcript triggered activation of translation with single-cell spatiotemporal resolution. To achieve sequential photo-activation of two mRNAs in the same cell, we synthesized a pair of ‘photo-cages’ which can be selectively cleaved from mRNA upon photo-irradiation with different wavelengths of light. Sequential photo-activation of two mRNAs enabled precise optical control of translation of two unique transcripts. We believe that this modular approach to precisely and rapidly control gene expression will serve as a powerful tool in future biological studies that require controlling translation of multiple transcripts with high spatiotemporal resolution.

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Posted March 20, 2020.
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Multiplexed photo-activation of mRNA with single-cell resolution
Dongyang Zhang, Shuaijiang Jin, Xijun Piao, Neal K. Devaraj
bioRxiv 2020.03.19.999631; doi: https://doi.org/10.1101/2020.03.19.999631
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Multiplexed photo-activation of mRNA with single-cell resolution
Dongyang Zhang, Shuaijiang Jin, Xijun Piao, Neal K. Devaraj
bioRxiv 2020.03.19.999631; doi: https://doi.org/10.1101/2020.03.19.999631

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