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Frisky CALF outruns LASSO

CD Jeffries, JR Ford, JL Tilson, DO Perkins, D Bost, D Filer, KC Wilhelmsen
doi: https://doi.org/10.1101/2020.03.27.011700
CD Jeffries
1Renaissance Computing Institute, University of North Carolina, Chapel Hill NC, USA
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  • For correspondence: clark_jeffries@med.unc.edu
JR Ford
2Perspectrix, Carrboro NC, USA
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JL Tilson
1Renaissance Computing Institute, University of North Carolina, Chapel Hill NC, USA
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DO Perkins
3Psychiatry, University of North Carolina, Chapel Hill NC, USA
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D Bost
4School of Medicine, University of North Carolina, Chapel Hill NC, USA
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D Filer
4School of Medicine, University of North Carolina, Chapel Hill NC, USA
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KC Wilhelmsen
5Genetics and Neurology, University of North Carolina, Chapel Hill NC, USA
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Abstract

Regression analysis is a mature body of knowledge, but there might be room for one more strategy with advantages regarding a class of problems common in modern medical research. Specifically, modern lines of investigation often involve several tens or a few hundred subjects but several hundred assays of cryptically related markers (e.g. blood plasma proteins for ~100 patients vs the same for ~100 unaffected persons). The class arises because research is expensive and sometimes carries a degree of risk to subjects. Also, reliable interpretation of results may employ not just a set of individually distinguished markers, but networks of related markers that are collectively—but not so much individually—informative. This article explores a linear regression strategy that chooses markers parsimoniously but also calculates weights robustly in the sense that both marker choices and weights are generally invariant with respect to small changes in input data. Furthermore, the method allows integration of markers of very different types, thereby improving classification performance and suggesting etiologies and treatments.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted March 29, 2020.
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Frisky CALF outruns LASSO
CD Jeffries, JR Ford, JL Tilson, DO Perkins, D Bost, D Filer, KC Wilhelmsen
bioRxiv 2020.03.27.011700; doi: https://doi.org/10.1101/2020.03.27.011700
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Frisky CALF outruns LASSO
CD Jeffries, JR Ford, JL Tilson, DO Perkins, D Bost, D Filer, KC Wilhelmsen
bioRxiv 2020.03.27.011700; doi: https://doi.org/10.1101/2020.03.27.011700

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