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Prion protein lowering is a disease-modifying therapy across prion disease stages, strains, and endpoints

View ORCID ProfileEric Vallabh Minikel, Hien T Zhao, Jason Le, Jill O’Moore, Rose Pitstick, Samantha Graffam, George A Carlson, Michael P Kavanaugh, Jasna Kriz, Jae Beom Kim, Jiyan Ma, Holger Wille, Judd Aiken, Deborah McKenzie, Katsumi Doh-ura, Matthew Beck, Rhonda O’Keefe, Jacquelyn Stathopoulos, Tyler Caron, Stuart L Schreiber, Jeffrey B Carroll, Holly B Kordasiewicz, Deborah E Cabin, View ORCID ProfileSonia M Vallabh
doi: https://doi.org/10.1101/2020.03.27.011940
Eric Vallabh Minikel
1Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
2Prion Alliance, Cambridge, MA, 02139, USA
3Henry and Allison McCance Center for Brain Health, Massachusetts General Hospital, Boston, MA, 02114, USA
4Department of Neurology, Massachusetts General Hospital, Boston, MA, 02114, USA
5Harvard Medical School, Boston, MA, 02115, USA
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  • ORCID record for Eric Vallabh Minikel
Hien T Zhao
6Ionis Pharmaceuticals Inc, Carlsbad, CA, 92010, USA
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Jason Le
7Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
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Jill O’Moore
8McLaughlin Research Institute, Great Falls, MT, 59405, USA
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Rose Pitstick
8McLaughlin Research Institute, Great Falls, MT, 59405, USA
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Samantha Graffam
7Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
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George A Carlson
8McLaughlin Research Institute, Great Falls, MT, 59405, USA
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Michael P Kavanaugh
8McLaughlin Research Institute, Great Falls, MT, 59405, USA
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Jasna Kriz
9Cervo Brain Research Center, Université Laval, Québec, QC, G1J 2G3, Canada
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Jae Beom Kim
10PerkinElmer, Hopkinton, MA, 01748, USA
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Jiyan Ma
11Center for Neurodegenerative Science, Van Andel Institute, Grand Rapids, MI, 49503, USA
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Holger Wille
12University of Alberta, Edmonton, AB, T6G 2M8, Canada
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Judd Aiken
12University of Alberta, Edmonton, AB, T6G 2M8, Canada
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Deborah McKenzie
12University of Alberta, Edmonton, AB, T6G 2M8, Canada
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Katsumi Doh-ura
13Department of Neurochemistry, Tohoku University Graduate School of Medicine, Sendai, Miyagi, 980-8575, Japan
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Matthew Beck
7Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
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Rhonda O’Keefe
7Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
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Jacquelyn Stathopoulos
7Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
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Tyler Caron
7Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
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Stuart L Schreiber
7Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
14Department of Chemistry & Chemical Biology, Harvard University, Cambridge, MA, 02138, USA
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Jeffrey B Carroll
15Western Washington University, Bellingham, WA, 98225, USA
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Holly B Kordasiewicz
6Ionis Pharmaceuticals Inc, Carlsbad, CA, 92010, USA
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  • For correspondence: svallabh@broadinstitute.org deborahcabin@mclaughlinresearch.org hkordasiewicz@ionisph.com
Deborah E Cabin
8McLaughlin Research Institute, Great Falls, MT, 59405, USA
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  • For correspondence: svallabh@broadinstitute.org deborahcabin@mclaughlinresearch.org hkordasiewicz@ionisph.com
Sonia M Vallabh
1Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
2Prion Alliance, Cambridge, MA, 02139, USA
3Henry and Allison McCance Center for Brain Health, Massachusetts General Hospital, Boston, MA, 02114, USA
4Department of Neurology, Massachusetts General Hospital, Boston, MA, 02114, USA
5Harvard Medical School, Boston, MA, 02115, USA
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  • ORCID record for Sonia M Vallabh
  • For correspondence: svallabh@broadinstitute.org deborahcabin@mclaughlinresearch.org hkordasiewicz@ionisph.com
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Abstract

Lowering of prion protein (PrP) expression in the brain is a genetically validated therapeutic hypothesis in prion disease. We recently showed that antisense oligonucleotide (ASO)-mediated PrP suppression extends survival and delays disease onset in intracerebrally prion-infected mice in both prophylactic and delayed dosing paradigms. Here, we examine the efficacy of this therapeutic approach across diverse paradigms, varying the dose and dosing regimen, prion strain, treatment timepoint, and examining symptomatic, survival, and biomarker readouts. We recapitulate our previous findings with additional PrP-targeting ASOs, and demonstrate therapeutic benefit against four additional prion strains. We demonstrate that less than 25% PrP suppression is sufficient to extend survival and delay symptoms in a prophylactic paradigm. Rise in both neuroinflammation and neuronal injury markers can be reversed by a single dose of PrP-lowering ASO administered after the detection of pathological change. Chronic ASO-mediated suppression of PrP beginning at any time up to early signs of neuropathology confers benefit similar to constitutive heterozygous PrP knockout. Remarkably, even after emergence of frank symptoms including weight loss, a single treatment prolongs survival by months in a subset of animals. These results support ASO-mediated PrP lowering, and PrP-lowering therapeutics in general, as a promising path forward against prion disease.

Competing Interest Statement

SMV has received speaking fees from Illumina and Biogen and has received research support in the form of unrestricted charitable contributions from Charles River Laboratories and Ionis Pharmaceuticals. EVM has received consulting fees from Deerfield Management and Guidepoint and has received research support in the form of unrestricted charitable contributions from Charles River Laboratories and Ionis Pharmaceuticals. HTZ and HBK are employees and shareholders of Ionis Pharmaceuticals. DEC has received research support from Ionis Pharmaceuticals. JBC has received research support from Ionis Pharmaceuticals, Wave Life Sciences, Triplet Therapeutics and consulting fees from Skyhawk Therapeutics and Guidepoint. SLS serves on the Board of Directors of the Genomics Institute of the Novartis Research Foundation (GNF); is a shareholder and serves on the Board of Directors of Jnana Therapeutics; is a shareholder of Forma Therapeutics; is a shareholder and advises Kojin Therapeutics, Kisbee Therapeutics, Decibel Therapeutics and Eikonizo Therapeutics; serves on the Scientific Advisory Boards of Eisai Co., Ltd., Ono Pharma Foundation, Exo Therapeutics, and F-Prime Capital Partners; and is a Novartis Faculty Scholar. Other authors report no conflicts.

Footnotes

  • More details on ASO discovery and animal behavioral tests added, statistical analyses and Discussion expanded.

  • http://github.com/ericminikel/prp_lowering

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted June 26, 2020.
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Prion protein lowering is a disease-modifying therapy across prion disease stages, strains, and endpoints
Eric Vallabh Minikel, Hien T Zhao, Jason Le, Jill O’Moore, Rose Pitstick, Samantha Graffam, George A Carlson, Michael P Kavanaugh, Jasna Kriz, Jae Beom Kim, Jiyan Ma, Holger Wille, Judd Aiken, Deborah McKenzie, Katsumi Doh-ura, Matthew Beck, Rhonda O’Keefe, Jacquelyn Stathopoulos, Tyler Caron, Stuart L Schreiber, Jeffrey B Carroll, Holly B Kordasiewicz, Deborah E Cabin, Sonia M Vallabh
bioRxiv 2020.03.27.011940; doi: https://doi.org/10.1101/2020.03.27.011940
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Prion protein lowering is a disease-modifying therapy across prion disease stages, strains, and endpoints
Eric Vallabh Minikel, Hien T Zhao, Jason Le, Jill O’Moore, Rose Pitstick, Samantha Graffam, George A Carlson, Michael P Kavanaugh, Jasna Kriz, Jae Beom Kim, Jiyan Ma, Holger Wille, Judd Aiken, Deborah McKenzie, Katsumi Doh-ura, Matthew Beck, Rhonda O’Keefe, Jacquelyn Stathopoulos, Tyler Caron, Stuart L Schreiber, Jeffrey B Carroll, Holly B Kordasiewicz, Deborah E Cabin, Sonia M Vallabh
bioRxiv 2020.03.27.011940; doi: https://doi.org/10.1101/2020.03.27.011940

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