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Persister state-directed transitioning and vulnerability in melanoma

Heike Chauvistré, Batool Shannan, Sheena M. Daignault, Robert J. Ju, Daniel Picard, Stefanie Egetemaier, Renáta Váraljai, Antonio Sechi, Farnusch Kaschani, Oliver Keminer, Samantha J. Stehbens, Qin Liu, Xiangfan Yin, Kirujan Jeyakumar, Felix C. E. Vogel, Clemens Krepler, Vito W. Rebecca, Linda Kubat, Smiths S Lueong, Jan Forster, Susanne Horn, Marc Remke, Michael Ehrmann, Annette Paschen, Jürgen C. Becker, Iris Helfrich, Daniel Rauh, Markus Kaiser, Sheraz Gul, Meenhard Herlyn, José Neptuno Rodríguez-López, Nikolas K. Haass, Dirk Schadendorf, Alexander Roesch
doi: https://doi.org/10.1101/2020.04.01.999847
Heike Chauvistré
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
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Batool Shannan
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
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Sheena M. Daignault
2The University of Queensland Diamantina Institute, The University of Queensland, Brisbane, Qld, Australia
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Robert J. Ju
2The University of Queensland Diamantina Institute, The University of Queensland, Brisbane, Qld, Australia
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Daniel Picard
3Department of Pediatric Oncology, hematology, and Clinical Immunology, Medical Faculty, University hospital Düsseldorf, Düsseldorf, Germany; Department of Neuropathology, Medical Faculty, University hospital Düsseldorf, Düsseldorf, Germany; Department of Pediatric Neuro-Oncogenomics, German Cancer Consortium (DKTK) and German Cancer Research Center (DKFZ), Düsseldorf, Germany.
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Stefanie Egetemaier
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
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Renáta Váraljai
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
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Antonio Sechi
4Institute for Biomedical Engineering, Department of Cell Biology, RWTH Aachen University Medical School, Aachen, Germany; Helmholtz Institute for Biomedical Engineering, RWTH Aachen University, Aachen, Germany.
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Farnusch Kaschani
5Chemical Biology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
6Center for Medical Biotechnology (ZMB), University of Duisburg-Essen, Essen, Germany.
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Oliver Keminer
7Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, Schnackenburgallee 114, 22525 Hamburg, Germany.
8Fraunhofer Cluster of Excellence for Immune-Mediated Diseases CIMD, Schnackenburgallee 114, 22525 Hamburg, Germany.
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Samantha J. Stehbens
2The University of Queensland Diamantina Institute, The University of Queensland, Brisbane, Qld, Australia
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Qin Liu
9The Wistar Institute, Philadelphia, U.S.A.
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Xiangfan Yin
9The Wistar Institute, Philadelphia, U.S.A.
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Kirujan Jeyakumar
10Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Strasse 4a, 44227, Dortmund, Germany.
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Felix C. E. Vogel
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
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Clemens Krepler
9The Wistar Institute, Philadelphia, U.S.A.
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Vito W. Rebecca
9The Wistar Institute, Philadelphia, U.S.A.
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Linda Kubat
11Translational Skin Cancer Research (tscr), German Cancer Consortium (DKTK), University Hospital of Essen, Universitätsstrasse 1, 45141 Essen, Germany.
12German Cancer Research Center (DKFZ), Heidelberg, Germany
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Smiths S Lueong
12German Cancer Research Center (DKFZ), Heidelberg, Germany
13Institute for Developmental Cancer Therapeutics, West German Cancer Center, University Hospital Essen, 45122 Essen, Germany.
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Jan Forster
12German Cancer Research Center (DKFZ), Heidelberg, Germany
14Chair for Genome Informatics, Department of Human Genetics, University Hospital Essen, University Duisburg-Essen, Hufelandstrasse 55, 45122 Essen, Germany.
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Susanne Horn
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
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Marc Remke
3Department of Pediatric Oncology, hematology, and Clinical Immunology, Medical Faculty, University hospital Düsseldorf, Düsseldorf, Germany; Department of Neuropathology, Medical Faculty, University hospital Düsseldorf, Düsseldorf, Germany; Department of Pediatric Neuro-Oncogenomics, German Cancer Consortium (DKTK) and German Cancer Research Center (DKFZ), Düsseldorf, Germany.
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Michael Ehrmann
6Center for Medical Biotechnology (ZMB), University of Duisburg-Essen, Essen, Germany.
15Microbiology, University of Duisburg-Essen, Universitätsstr. 2, 45117, Essen, Germany
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Annette Paschen
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
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Jürgen C. Becker
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
11Translational Skin Cancer Research (tscr), German Cancer Consortium (DKTK), University Hospital of Essen, Universitätsstrasse 1, 45141 Essen, Germany.
12German Cancer Research Center (DKFZ), Heidelberg, Germany
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Iris Helfrich
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
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Daniel Rauh
10Faculty of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Strasse 4a, 44227, Dortmund, Germany.
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Markus Kaiser
5Chemical Biology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
6Center for Medical Biotechnology (ZMB), University of Duisburg-Essen, Essen, Germany.
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Sheraz Gul
7Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, Schnackenburgallee 114, 22525 Hamburg, Germany.
8Fraunhofer Cluster of Excellence for Immune-Mediated Diseases CIMD, Schnackenburgallee 114, 22525 Hamburg, Germany.
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Meenhard Herlyn
9The Wistar Institute, Philadelphia, U.S.A.
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José Neptuno Rodríguez-López
16GENZ-Group of Research on Enzymology, Department of Biochemistry and Molecular Biology-A, Regional Campus of International Excellence “Campus Mare Nostrum,”, University of Murcia, Murcia, Spain
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Nikolas K. Haass
2The University of Queensland Diamantina Institute, The University of Queensland, Brisbane, Qld, Australia
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Dirk Schadendorf
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
6Center for Medical Biotechnology (ZMB), University of Duisburg-Essen, Essen, Germany.
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Alexander Roesch
1Department of Dermatology, University Hospital Essen, West German Cancer Center, University Duisburg-Essen and the German Cancer Consortium (DKTK)
6Center for Medical Biotechnology (ZMB), University of Duisburg-Essen, Essen, Germany.
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  • For correspondence: alexander.roesch@uk-essen.de
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Abstract

Melanoma is a highly plastic tumor characterized by dynamic interconversion of different cell identities depending on the biological context. For example, melanoma cells with high expression of the H3K4 demethylase KDM5B (JARID1B) rest in a slow-cycling, yet reversible persister state. Over time, KDM5Bhigh cells can promote rapid tumor repopulation with equilibrated KDM5B expression heterogeneity. The cellular identity of KDM5Bhigh persister cells has not been studied so far, missing an important cell state-directed treatment opportunity in melanoma. Here, we have established a doxycycline-titratable system for genetic induction of permanent intratumor expression of KDM5B and screened for chemical agents that phenocopy this effect. Transcriptional profiling and cell functional assays confirmed that the dihydropyridine phenoxyethyl 4-(2-fluorophenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexa-hydro-quinoline-3-carboxylate (termed Cpd1) supports high KDM5B expression and directs melanoma cells towards differentiation along the melanocytic lineage and to cell cycle-arrest. The high KDM5B state additionally prevents cell proliferation through negative regulation of cytokinetic abscission. Moreover, treatment with Cpd1 promoted the expression of the melanocyte-specific tyrosinase gene specifically sensitizing melanoma cells for the tyrosinase-processed antifolate prodrug 3-O-(3,4,5-trimethoxybenzoyl)-(-)-epicatechin (TMECG). In summary, our study provides proof-of-concept for a new dual hit strategy in melanoma, in which persister state-directed transitioning limits tumor growth and plasticity and primes melanoma cells towards lineage-specific elimination.

Competing Interest Statement

The authors have declared no competing interest.

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Persister state-directed transitioning and vulnerability in melanoma
Heike Chauvistré, Batool Shannan, Sheena M. Daignault, Robert J. Ju, Daniel Picard, Stefanie Egetemaier, Renáta Váraljai, Antonio Sechi, Farnusch Kaschani, Oliver Keminer, Samantha J. Stehbens, Qin Liu, Xiangfan Yin, Kirujan Jeyakumar, Felix C. E. Vogel, Clemens Krepler, Vito W. Rebecca, Linda Kubat, Smiths S Lueong, Jan Forster, Susanne Horn, Marc Remke, Michael Ehrmann, Annette Paschen, Jürgen C. Becker, Iris Helfrich, Daniel Rauh, Markus Kaiser, Sheraz Gul, Meenhard Herlyn, José Neptuno Rodríguez-López, Nikolas K. Haass, Dirk Schadendorf, Alexander Roesch
bioRxiv 2020.04.01.999847; doi: https://doi.org/10.1101/2020.04.01.999847
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Persister state-directed transitioning and vulnerability in melanoma
Heike Chauvistré, Batool Shannan, Sheena M. Daignault, Robert J. Ju, Daniel Picard, Stefanie Egetemaier, Renáta Váraljai, Antonio Sechi, Farnusch Kaschani, Oliver Keminer, Samantha J. Stehbens, Qin Liu, Xiangfan Yin, Kirujan Jeyakumar, Felix C. E. Vogel, Clemens Krepler, Vito W. Rebecca, Linda Kubat, Smiths S Lueong, Jan Forster, Susanne Horn, Marc Remke, Michael Ehrmann, Annette Paschen, Jürgen C. Becker, Iris Helfrich, Daniel Rauh, Markus Kaiser, Sheraz Gul, Meenhard Herlyn, José Neptuno Rodríguez-López, Nikolas K. Haass, Dirk Schadendorf, Alexander Roesch
bioRxiv 2020.04.01.999847; doi: https://doi.org/10.1101/2020.04.01.999847

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