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Automatic subtyping of individuals with Primary Progressive Aphasia

View ORCID ProfileCharalambos Themistocleous, Bronte Ficek, View ORCID ProfileKimberly Webster, Dirk-Bart den Ouden, View ORCID ProfileArgye E. Hillis, View ORCID ProfileKyrana Tsapkini
doi: https://doi.org/10.1101/2020.04.04.025593
Charalambos Themistocleous
1Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
Ph.D.
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  • ORCID record for Charalambos Themistocleous
  • For correspondence: tsapkini@jhmi.edu cthemis1@jhu.edu
Bronte Ficek
1Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
M.H.S
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Kimberly Webster
1Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
M.A., M.S.
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  • ORCID record for Kimberly Webster
Dirk-Bart den Ouden
2Arnold School of Public Health, University of South Carolina, Columbia, SC, USA
Ph.D.
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Argye E. Hillis
1Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
M.D.
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Kyrana Tsapkini
1Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
Ph.D.
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  • ORCID record for Kyrana Tsapkini
  • For correspondence: tsapkini@jhmi.edu cthemis1@jhu.edu
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Abstract

Objective The classification of patients with Primary Progressive Aphasia into variants is time consuming, costly, and requires combined evaluations by clinical neurologists, neuropsychologists, speech pathologists, and radiologists. Therefore, our aim is to determine if acoustic and linguistic variables provide accurate classification of PPA patients into one of the three variants.

Methods In this paper, we present a machine learning model based on Deep Neural Networks for the subtyping of patients with PPA into the three main variants using combined acoustic and linguistic information elicited automatically using acoustic and linguistic analysis. The performance of the Deep Neural Networks was compared to the classification accuracy of Random Forests, Support Vector Machines, and Decision Trees. It was also compared to the classification based on auditory scores provided by clinicians.

Results The DNN model resulted in 80% classification accuracy providing reliable subtyping of patients with PPA into variants that outperformed other machine learning models and auditory classification of patients into variants by clinicians.

Conclusion We show that combined measures of speech and language function as the patients’ fingerprint and provide information about patients’ symptoms and variant subtyping. This approach can enable clinicians and researchers to employ this fingerprint and provide an automatic classification of patients with PPA saving much time and money.

Footnotes

  • Study funding: This project was supported by the Science of Learning Institute at Johns Hopkins University grant to Dr. Kyrana Tsapkini (NIH/NIDCD R01 DC014475).

  • Disclosures: All of the authors report no disclosures.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted April 05, 2020.
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Automatic subtyping of individuals with Primary Progressive Aphasia
Charalambos Themistocleous, Bronte Ficek, Kimberly Webster, Dirk-Bart den Ouden, Argye E. Hillis, Kyrana Tsapkini
bioRxiv 2020.04.04.025593; doi: https://doi.org/10.1101/2020.04.04.025593
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Automatic subtyping of individuals with Primary Progressive Aphasia
Charalambos Themistocleous, Bronte Ficek, Kimberly Webster, Dirk-Bart den Ouden, Argye E. Hillis, Kyrana Tsapkini
bioRxiv 2020.04.04.025593; doi: https://doi.org/10.1101/2020.04.04.025593

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