Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Improved genetically encoded near-infrared fluorescent calcium ion indicators for in vivo imaging

View ORCID ProfileYong Qian, Danielle M. Orozco Cosio, Kiryl D. Piatkevich, View ORCID ProfileSarah Aufmkolk, Wan-Chi Su, Orhan T. Celiker, Anne Schohl, Mitchell H. Murdock, Abhi Aggarwal, Yu-Fen Chang, Paul W. Wiseman, Edward S. Ruthazer, Edward S. Boyden, View ORCID ProfileRobert E. Campbell
doi: https://doi.org/10.1101/2020.04.08.032433
Yong Qian
1Department of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada
2Departments of Biological Engineering and Brain and Cognitive Sciences, McGovern Institute, Media Lab, and Koch Institute, MIT, Cambridge, Massachusetts, 02139, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Yong Qian
Danielle M. Orozco Cosio
2Departments of Biological Engineering and Brain and Cognitive Sciences, McGovern Institute, Media Lab, and Koch Institute, MIT, Cambridge, Massachusetts, 02139, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kiryl D. Piatkevich
2Departments of Biological Engineering and Brain and Cognitive Sciences, McGovern Institute, Media Lab, and Koch Institute, MIT, Cambridge, Massachusetts, 02139, United States
3School of Life Sciences, Westlake University, Hangzhou, 310024, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sarah Aufmkolk
4Montreal Neurological Institute-Hospital, Department of Neurology and Neurosurgery, 3801 rue University, McGill University, Montreal, Quebec H3A 2B4, Canada
5Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec, H3A 0B8, Canada
9Department of Genetics, Harvard Medical School, Boston, MA, 02115, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Sarah Aufmkolk
Wan-Chi Su
6LumiSTAR Biotechnology, Nangang District, Taipei City, 115, Taiwan.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Orhan T. Celiker
2Departments of Biological Engineering and Brain and Cognitive Sciences, McGovern Institute, Media Lab, and Koch Institute, MIT, Cambridge, Massachusetts, 02139, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Anne Schohl
4Montreal Neurological Institute-Hospital, Department of Neurology and Neurosurgery, 3801 rue University, McGill University, Montreal, Quebec H3A 2B4, Canada
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Mitchell H. Murdock
2Departments of Biological Engineering and Brain and Cognitive Sciences, McGovern Institute, Media Lab, and Koch Institute, MIT, Cambridge, Massachusetts, 02139, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Abhi Aggarwal
7Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, Virginia, 20147, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yu-Fen Chang
6LumiSTAR Biotechnology, Nangang District, Taipei City, 115, Taiwan.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Paul W. Wiseman
5Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Quebec, H3A 0B8, Canada
8Department of Physics, McGill University, 3600 University St., Montreal, Quebec, H3A 2T8, Canada
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Edward S. Ruthazer
4Montreal Neurological Institute-Hospital, Department of Neurology and Neurosurgery, 3801 rue University, McGill University, Montreal, Quebec H3A 2B4, Canada
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Edward S. Boyden
2Departments of Biological Engineering and Brain and Cognitive Sciences, McGovern Institute, Media Lab, and Koch Institute, MIT, Cambridge, Massachusetts, 02139, United States
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Robert E. Campbell
1Department of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada
10Department of Chemistry, The University of Tokyo, Tokyo, 113-0033, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Robert E. Campbell
  • For correspondence: robert.e.campbell@ualberta.ca
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

Near-infrared (NIR) genetically-encoded calcium ion (Ca2+) indicators (GECIs) can provide advantages over visible wavelength fluorescent GECIs in terms of reduced phototoxicity, minimal spectral cross-talk with visible-light excitable optogenetic tools and fluorescent probes, and decreased scattering and absorption in mammalian tissues. Our previously reported NIR GECI, NIR-GECO1, has these advantages but also has several disadvantages including lower brightness and limited fluorescence response compared to state-of-the-art visible wavelength GECIs, when used for imaging of neuronal activity. Here, we report two improved NIR GECI variants, designated NIR-GECO2 and NIR-GECO2G, derived from NIR-GECO1. We characterized the performance of the new NIR GECIs in cultured cells, acute mouse brain slices, and C. elegans and Xenopus laevis in vivo. Our results demonstrate that NIR-GECO2 and NIR-GECO2G provide substantial improvements over NIR-GECO1 for imaging of neuronal Ca2+ dynamics.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted April 10, 2020.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Improved genetically encoded near-infrared fluorescent calcium ion indicators for in vivo imaging
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Improved genetically encoded near-infrared fluorescent calcium ion indicators for in vivo imaging
Yong Qian, Danielle M. Orozco Cosio, Kiryl D. Piatkevich, Sarah Aufmkolk, Wan-Chi Su, Orhan T. Celiker, Anne Schohl, Mitchell H. Murdock, Abhi Aggarwal, Yu-Fen Chang, Paul W. Wiseman, Edward S. Ruthazer, Edward S. Boyden, Robert E. Campbell
bioRxiv 2020.04.08.032433; doi: https://doi.org/10.1101/2020.04.08.032433
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Improved genetically encoded near-infrared fluorescent calcium ion indicators for in vivo imaging
Yong Qian, Danielle M. Orozco Cosio, Kiryl D. Piatkevich, Sarah Aufmkolk, Wan-Chi Su, Orhan T. Celiker, Anne Schohl, Mitchell H. Murdock, Abhi Aggarwal, Yu-Fen Chang, Paul W. Wiseman, Edward S. Ruthazer, Edward S. Boyden, Robert E. Campbell
bioRxiv 2020.04.08.032433; doi: https://doi.org/10.1101/2020.04.08.032433

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Molecular Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (4230)
  • Biochemistry (9123)
  • Bioengineering (6766)
  • Bioinformatics (23968)
  • Biophysics (12109)
  • Cancer Biology (9509)
  • Cell Biology (13753)
  • Clinical Trials (138)
  • Developmental Biology (7623)
  • Ecology (11674)
  • Epidemiology (2066)
  • Evolutionary Biology (15490)
  • Genetics (10631)
  • Genomics (14310)
  • Immunology (9473)
  • Microbiology (22821)
  • Molecular Biology (9086)
  • Neuroscience (48919)
  • Paleontology (355)
  • Pathology (1480)
  • Pharmacology and Toxicology (2566)
  • Physiology (3840)
  • Plant Biology (8322)
  • Scientific Communication and Education (1468)
  • Synthetic Biology (2295)
  • Systems Biology (6180)
  • Zoology (1299)