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Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers

Michael J Petrany, Casey O Swoboda, Chengyi Sun, Kashish Chetal, View ORCID ProfileXiaoting Chen, Matthew T. Weirauch, View ORCID ProfileNathan Salomonis, View ORCID ProfileDouglas P Millay
doi: https://doi.org/10.1101/2020.04.14.041400
Michael J Petrany
1Division of Molecular Cardiovascular Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
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Casey O Swoboda
1Division of Molecular Cardiovascular Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
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Chengyi Sun
1Division of Molecular Cardiovascular Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
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Kashish Chetal
2Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
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Xiaoting Chen
3Center for Autoimmune Genomics and Etiology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
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Matthew T. Weirauch
2Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
3Center for Autoimmune Genomics and Etiology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
4Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA
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Nathan Salomonis
2Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
4Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA
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Douglas P Millay
1Division of Molecular Cardiovascular Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
4Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA
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  • ORCID record for Douglas P Millay
  • For correspondence: douglas.millay@cchmc.org
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Abstract

While the majority of cells contain a single nucleus, cell types such as trophoblasts, osteoclasts, and skeletal myofibers require multinucleation. One advantage of multinucleation can be the assignment of distinct functions to different nuclei, but comprehensive interrogation of transcriptional heterogeneity within multinucleated tissues has been challenging due to the presence of a shared cytoplasm. Here, we utilized single-nucleus RNA-sequencing (snRNA-seq) to determine the extent of transcriptional diversity within multinucleated skeletal myofibers. Nuclei from mouse skeletal muscle were profiled across the lifespan, which revealed the emergence of distinct myonuclear populations in postnatal development and their reactivation in aging muscle. Our datasets also provided a platform for discovery of novel genes associated with rare specialized regions of the muscle cell, including markers of the myotendinous junction and functionally validated factors expressed at the neuromuscular junction. These findings reveal that myonuclei within syncytial muscle fibers possess distinct transcriptional profiles that regulate muscle biology.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://research.cchmc.org/myoatlas/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 15, 2020.
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Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers
Michael J Petrany, Casey O Swoboda, Chengyi Sun, Kashish Chetal, Xiaoting Chen, Matthew T. Weirauch, Nathan Salomonis, Douglas P Millay
bioRxiv 2020.04.14.041400; doi: https://doi.org/10.1101/2020.04.14.041400
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Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers
Michael J Petrany, Casey O Swoboda, Chengyi Sun, Kashish Chetal, Xiaoting Chen, Matthew T. Weirauch, Nathan Salomonis, Douglas P Millay
bioRxiv 2020.04.14.041400; doi: https://doi.org/10.1101/2020.04.14.041400

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