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A comprehensive benchmarking of WGS-based structural variant callers
Varuni Sarwal, Sebastian Niehus, Ram Ayyala, Sei Chang, Angela Lu, Nicholas Darci-Maher, Russell Littman, Karishma Chhugani, Arda Soylev, Zoia Comarova, Emily Wesel, Jacqueline Castellanos, Rahul Chikka, Margaret G. Distler, Eleazar Eskin, Jonathan Flint, View ORCID ProfileSerghei Mangul
doi: https://doi.org/10.1101/2020.04.16.045120
Varuni Sarwal
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
2Indian Institute of Technology Delhi, Hauz Khas, New Delhi, Delhi 110016, India
Sebastian Niehus
3Berlin Institute of Health (BIH), Anna-Louisa-Karsch-Str. 2, 10178 Berlin, Germany
4Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Charitéplatz 1, 10117 Berlin, Germany
Ram Ayyala
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
Sei Chang
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
Angela Lu
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
Nicholas Darci-Maher
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
Russell Littman
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
Karishma Chhugani
5Department of Clinical Pharmacy, School of Pharmacy, University of Southern California 1985 Zonal Avenue Los Angeles, CA 90089-9121
Arda Soylev
6Konya Gıda Ve Tarım Üniversitesi, Melikşah, Beyşehir Cd. No:9, 42080 Meram/Konya, Turkey
Zoia Comarova
7Paradigm Environmental, 3911 Old Lee Highway, Fairfax, VA 22030
Emily Wesel
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
Jacqueline Castellanos
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
Rahul Chikka
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
Margaret G. Distler
8Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, University of California Los Angeles, 760 Westwood Plaza, Los Angeles, CA 90095, USA
Eleazar Eskin
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
9Department of Human Genetics, David Geffen School of Medicine at UCLA, 695 Charles E. Young Drive South, Box 708822, Los Angeles, CA, 90095, USA
10Department of Computational Medicine, David Geffen School of Medicine at UCLA, 73-235 CHS, Los Angeles, CA, 90095, USA
Jonathan Flint
8Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, University of California Los Angeles, 760 Westwood Plaza, Los Angeles, CA 90095, USA
Serghei Mangul
5Department of Clinical Pharmacy, School of Pharmacy, University of Southern California 1985 Zonal Avenue Los Angeles, CA 90089-9121
11Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, 90089, USA
Article usage
Posted August 04, 2020.
A comprehensive benchmarking of WGS-based structural variant callers
Varuni Sarwal, Sebastian Niehus, Ram Ayyala, Sei Chang, Angela Lu, Nicholas Darci-Maher, Russell Littman, Karishma Chhugani, Arda Soylev, Zoia Comarova, Emily Wesel, Jacqueline Castellanos, Rahul Chikka, Margaret G. Distler, Eleazar Eskin, Jonathan Flint, Serghei Mangul
bioRxiv 2020.04.16.045120; doi: https://doi.org/10.1101/2020.04.16.045120
A comprehensive benchmarking of WGS-based structural variant callers
Varuni Sarwal, Sebastian Niehus, Ram Ayyala, Sei Chang, Angela Lu, Nicholas Darci-Maher, Russell Littman, Karishma Chhugani, Arda Soylev, Zoia Comarova, Emily Wesel, Jacqueline Castellanos, Rahul Chikka, Margaret G. Distler, Eleazar Eskin, Jonathan Flint, Serghei Mangul
bioRxiv 2020.04.16.045120; doi: https://doi.org/10.1101/2020.04.16.045120
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