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Optimal sampling design for spatial capture-recapture

View ORCID ProfileGates Dupont, View ORCID ProfileJ. Andrew Royle, Muhammad Ali Nawaz, View ORCID ProfileChris Sutherland
doi: https://doi.org/10.1101/2020.04.16.045740
Gates Dupont
1University of Massachusetts–Amherst, MA, USA
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J. Andrew Royle
2U.S. Geological Survey, Laurel, MD, USA
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Muhammad Ali Nawaz
3Department of Animal Sciences, Quaid-i-Azam University, 44000, Islamabad, Pakistan
4Snow Leopard Trust, Seattle, WA, USA
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Chris Sutherland
1University of Massachusetts–Amherst, MA, USA
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  • For correspondence: csutherland@umass.edu
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Abstract

Spatial capture-recapture (SCR) has emerged as the industry standard for estimating population density by leveraging information from spatial locations of repeat encounters of individuals. The precision of density estimates depends fundamentally on the number and spatial configuration of traps. Despite this knowledge, existing sampling design recommendations are heuristic and their performance remains untested for most practical applications. To address this issue, we propose a genetic algorithm that minimizes any sensible, criteria-based objective function to produce near-optimal sampling designs. To motivate the idea of optimality, we compare the performance of designs optimized using three model-based criteria related to the probability of capture. We use simulation to show that these designs out-perform those based on existing recommendations in terms of bias, precision, and accuracy in the estimation of population size. Our approach allows conservation practitioners and researchers to generate customized and improved sampling designs for wildlife monitoring.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Major: Addition of a third criterion, Qpb, which explicitly balances the Qp and Qpm criteria and creates designs best described as "clustered space-filling." Minor: Cleaned up the text, expanding in a few areas, and streamlining our use of the term "optimal."

  • https://github.com/GatesDupont/scr_design_sims

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license.
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Posted July 30, 2020.
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Optimal sampling design for spatial capture-recapture
Gates Dupont, J. Andrew Royle, Muhammad Ali Nawaz, Chris Sutherland
bioRxiv 2020.04.16.045740; doi: https://doi.org/10.1101/2020.04.16.045740
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Optimal sampling design for spatial capture-recapture
Gates Dupont, J. Andrew Royle, Muhammad Ali Nawaz, Chris Sutherland
bioRxiv 2020.04.16.045740; doi: https://doi.org/10.1101/2020.04.16.045740

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