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Host, Viral, and Environmental Transcriptome Profiles of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)
Daniel J. Butler, Christopher Mozsary, Cem Meydan, David Danko, Jonathan Foox, Joel Rosiene, Alon Shaiber, Ebrahim Afshinnekoo, Matthew MacKay, Fritz J. Sedlazeck, Nikolay A. Ivanov, Maria Sierra, Diana Pohle, Michael Zietz, Vijendra Ramlall, Undina Gisladottir, Craig D. Westover, Krista Ryon, Benjamin Young, Chandrima Bhattacharya, Phyllis Ruggiero, Bradley W. Langhorst, Nathan Tanner, Justyna Gawrys, Dmitry Meleshko, Dong Xu, Jenny Xiang, Angelika Iftner, Daniela Bezdan, John Sipley, Lin Cong, Arryn Craney, Priya Velu, Ari M. Melnick, Iman Hajirasouliha, Thomas Iftner, Mirella Salvatore, Massimo Loda, Lars F. Westblade, Shawn Levy, Melissa Cushing, View ORCID ProfileNicholas Tatonetti, Marcin Imielinski, Hanna Rennert, View ORCID ProfileChristopher E. Mason
doi: https://doi.org/10.1101/2020.04.20.048066
Daniel J. Butler
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
Christopher Mozsary
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
Cem Meydan
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, NY, USA
4WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, NY, USA
David Danko
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
2Tri-Institutional Computational Biol. & Medicine Program, Weill Cornell Medicine, NY, USA
Jonathan Foox
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, NY, USA
Joel Rosiene
5New York Genome Center, NY, USA
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Alon Shaiber
5New York Genome Center, NY, USA
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Ebrahim Afshinnekoo
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, NY, USA
4WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, NY, USA
Matthew MacKay
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
Fritz J. Sedlazeck
7Baylor College of Medicine, Houston, TX, USA
Nikolay A. Ivanov
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, NY, USA
8Clinical & Translational Science Center, Weill Cornell Medicine, NY, USA
Maria Sierra
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
Diana Pohle
13Institute of Medical Virology and Epidemiology of Viral Diseases, University Hospital Tuebingen, Germany
Michael Zietz
14Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, NY, USA
Vijendra Ramlall
14Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, NY, USA
15Department of Cellular and Molecular Physiology & Biophysics
Undina Gisladottir
14Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, NY, USA
Craig D. Westover
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
Krista Ryon
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
Benjamin Young
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
Chandrima Bhattacharya
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
Phyllis Ruggiero
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Bradley W. Langhorst
16New England Biolabs, MA, USA
Nathan Tanner
16New England Biolabs, MA, USA
Justyna Gawrys
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Dmitry Meleshko
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
2Tri-Institutional Computational Biol. & Medicine Program, Weill Cornell Medicine, NY, USA
Dong Xu
10Genomics Resources Core Facility, Weill Cornell Medicine, NY, USA
Jenny Xiang
8Clinical & Translational Science Center, Weill Cornell Medicine, NY, USA
10Genomics Resources Core Facility, Weill Cornell Medicine, NY, USA
Angelika Iftner
13Institute of Medical Virology and Epidemiology of Viral Diseases, University Hospital Tuebingen, Germany
Daniela Bezdan
13Institute of Medical Virology and Epidemiology of Viral Diseases, University Hospital Tuebingen, Germany
John Sipley
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Lin Cong
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Arryn Craney
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Priya Velu
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Ari M. Melnick
17Department of Medicine, Weill Cornell Medicine, NY, USA
Iman Hajirasouliha
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, NY, USA
18Englander Institute for Precision Medicine and the Meyer Cancer Center, Weill Cornell Medicine, NY, USA
Thomas Iftner
13Institute of Medical Virology and Epidemiology of Viral Diseases, University Hospital Tuebingen, Germany
Mirella Salvatore
9Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, NY, USA
Massimo Loda
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Lars F. Westblade
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
9Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, NY, USA
Shawn Levy
11HudsonAlpha Discovery Institute, Huntsville, AL, USA
Melissa Cushing
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Nicholas Tatonetti
14Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, NY, USA
Marcin Imielinski
5New York Genome Center, NY, USA
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Hanna Rennert
6Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, NY, USA
Christopher E. Mason
1Department of Physiology and Biophysics, Weill Cornell Medicine, NY, USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, NY, USA
5New York Genome Center, NY, USA
12The Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, NY, USA
Article usage
Posted April 21, 2020.
Host, Viral, and Environmental Transcriptome Profiles of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)
Daniel J. Butler, Christopher Mozsary, Cem Meydan, David Danko, Jonathan Foox, Joel Rosiene, Alon Shaiber, Ebrahim Afshinnekoo, Matthew MacKay, Fritz J. Sedlazeck, Nikolay A. Ivanov, Maria Sierra, Diana Pohle, Michael Zietz, Vijendra Ramlall, Undina Gisladottir, Craig D. Westover, Krista Ryon, Benjamin Young, Chandrima Bhattacharya, Phyllis Ruggiero, Bradley W. Langhorst, Nathan Tanner, Justyna Gawrys, Dmitry Meleshko, Dong Xu, Jenny Xiang, Angelika Iftner, Daniela Bezdan, John Sipley, Lin Cong, Arryn Craney, Priya Velu, Ari M. Melnick, Iman Hajirasouliha, Thomas Iftner, Mirella Salvatore, Massimo Loda, Lars F. Westblade, Shawn Levy, Melissa Cushing, Nicholas Tatonetti, Marcin Imielinski, Hanna Rennert, Christopher E. Mason
bioRxiv 2020.04.20.048066; doi: https://doi.org/10.1101/2020.04.20.048066
Host, Viral, and Environmental Transcriptome Profiles of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)
Daniel J. Butler, Christopher Mozsary, Cem Meydan, David Danko, Jonathan Foox, Joel Rosiene, Alon Shaiber, Ebrahim Afshinnekoo, Matthew MacKay, Fritz J. Sedlazeck, Nikolay A. Ivanov, Maria Sierra, Diana Pohle, Michael Zietz, Vijendra Ramlall, Undina Gisladottir, Craig D. Westover, Krista Ryon, Benjamin Young, Chandrima Bhattacharya, Phyllis Ruggiero, Bradley W. Langhorst, Nathan Tanner, Justyna Gawrys, Dmitry Meleshko, Dong Xu, Jenny Xiang, Angelika Iftner, Daniela Bezdan, John Sipley, Lin Cong, Arryn Craney, Priya Velu, Ari M. Melnick, Iman Hajirasouliha, Thomas Iftner, Mirella Salvatore, Massimo Loda, Lars F. Westblade, Shawn Levy, Melissa Cushing, Nicholas Tatonetti, Marcin Imielinski, Hanna Rennert, Christopher E. Mason
bioRxiv 2020.04.20.048066; doi: https://doi.org/10.1101/2020.04.20.048066
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