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GlobalFungi: Global database of fungal records from high-throughput-sequencing metabarcoding studies

View ORCID ProfileTomáš Větrovský, View ORCID ProfileDaniel Morais, View ORCID ProfilePetr Kohout, View ORCID ProfileClémentine Lepinay, View ORCID ProfileCamelia Algora Gallardo, View ORCID ProfileSandra Awokunle Hollá, View ORCID ProfileBarbara Doreen Bahnmann, View ORCID ProfileKvěta Bílohnědá, View ORCID ProfileVendula Brabcová, View ORCID ProfileFederica D’Alò, View ORCID ProfileZander Rainier Human, View ORCID ProfileMayuko Jomura, View ORCID ProfileMiroslav Kolařík, View ORCID ProfileJana Kvasničková, View ORCID ProfileSalvador Lladó, Rubén López-Mondéjar, View ORCID ProfileTijana Martinović, Tereza Mašínová, View ORCID ProfileLenka Meszárošová, Lenka Michalčíková, Tereza Michalová, View ORCID ProfileSunil Mundra, Diana Navrátilová, Iñaki Odriozola, View ORCID ProfileSarah Piché-Choquette, Martina Štursová, Karel Švec, View ORCID ProfileVojtěch Tláskal, Michaela Urbanová, Lukáš Vlk, Jana Voříšková, Lucia Žifčáková, View ORCID ProfilePetr Baldrian
doi: https://doi.org/10.1101/2020.04.24.060384
Tomáš Větrovský
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Daniel Morais
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Petr Kohout
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Clémentine Lepinay
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Camelia Algora Gallardo
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Sandra Awokunle Hollá
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Barbara Doreen Bahnmann
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Květa Bílohnědá
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Vendula Brabcová
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Federica D’Alò
2Laboratory of Systematic Botany and Mycology, University of Tuscia, Largo dell’Università snc, Viterbo 01100, Italy
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Zander Rainier Human
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Mayuko Jomura
3Department of Forest Science and Resources, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
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Miroslav Kolařík
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Jana Kvasničková
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Salvador Lladó
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Rubén López-Mondéjar
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Tijana Martinović
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Tereza Mašínová
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Lenka Meszárošová
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Lenka Michalčíková
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Tereza Michalová
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Sunil Mundra
4Department of Biology, United Arab Emirates University, Al Ain, Abu Dhabi, United Arab Emirates
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Diana Navrátilová
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Iñaki Odriozola
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Sarah Piché-Choquette
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Martina Štursová
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Karel Švec
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Vojtěch Tláskal
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Michaela Urbanová
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Lukáš Vlk
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Jana Voříšková
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Lucia Žifčáková
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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Petr Baldrian
1Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220 Praha 4, Czech Republic
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  • For correspondence: baldrian@biomed.cas.cz
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Abstract

Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition, symbiotic associations with cultural and wild plants and pathogenicity. The high importance of fungi in the ecosystem processes contrasts with the incompleteness of understanding of the patterns of fungal biogeography and the environmental factors that drive it. To close this gap of knowledge, we have here collected and validated data published on the composition of soil fungal communities in terrestrial environments including soil and plant-associated habitats and made them publicly accessible through a user interface at http://globalfungi.com. The GlobalFungi database contains over 650 million observations of fungal sequences across >20 000 samples with geographical locations and additional metadata contained in 207 original studies with millions of unique sequence variants of the fungal internal transcribed spacers (ITS) 1 and 2 representing fungal species and genera. As it is, the study represents the most comprehensive atlas of fungal distribution on the global scale open to further additions.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • http://globalfungi.com

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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GlobalFungi: Global database of fungal records from high-throughput-sequencing metabarcoding studies
Tomáš Větrovský, Daniel Morais, Petr Kohout, Clémentine Lepinay, Camelia Algora Gallardo, Sandra Awokunle Hollá, Barbara Doreen Bahnmann, Květa Bílohnědá, Vendula Brabcová, Federica D’Alò, Zander Rainier Human, Mayuko Jomura, Miroslav Kolařík, Jana Kvasničková, Salvador Lladó, Rubén López-Mondéjar, Tijana Martinović, Tereza Mašínová, Lenka Meszárošová, Lenka Michalčíková, Tereza Michalová, Sunil Mundra, Diana Navrátilová, Iñaki Odriozola, Sarah Piché-Choquette, Martina Štursová, Karel Švec, Vojtěch Tláskal, Michaela Urbanová, Lukáš Vlk, Jana Voříšková, Lucia Žifčáková, Petr Baldrian
bioRxiv 2020.04.24.060384; doi: https://doi.org/10.1101/2020.04.24.060384
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GlobalFungi: Global database of fungal records from high-throughput-sequencing metabarcoding studies
Tomáš Větrovský, Daniel Morais, Petr Kohout, Clémentine Lepinay, Camelia Algora Gallardo, Sandra Awokunle Hollá, Barbara Doreen Bahnmann, Květa Bílohnědá, Vendula Brabcová, Federica D’Alò, Zander Rainier Human, Mayuko Jomura, Miroslav Kolařík, Jana Kvasničková, Salvador Lladó, Rubén López-Mondéjar, Tijana Martinović, Tereza Mašínová, Lenka Meszárošová, Lenka Michalčíková, Tereza Michalová, Sunil Mundra, Diana Navrátilová, Iñaki Odriozola, Sarah Piché-Choquette, Martina Štursová, Karel Švec, Vojtěch Tláskal, Michaela Urbanová, Lukáš Vlk, Jana Voříšková, Lucia Žifčáková, Petr Baldrian
bioRxiv 2020.04.24.060384; doi: https://doi.org/10.1101/2020.04.24.060384

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