Abstract
We present version 2 of the MSnbase R/Bioconductor package. MSnbase provides infrastructure for the manipulation, processing and visualisation of mass spectrometry data. We focus on the new on-disk infrastructure, that allows the handling of large raw mass spectrometry experiments on commodity hardware and illustrate how the package is used for elegant data processing, method development, and visualisation.
Competing Interest Statement
The authors have declared no competing interest.
Footnotes
Explain usage for in-memory and on-disk backends (fix typo fixed).
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
Posted August 29, 2020.
MSnbase, efficient and elegant R-based processing and visualisation of raw mass spectrometry data
