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Transcriptomic response of an Antarctic yeast Rhodotorula sp. USM-PSY62 to temperature changes

Cleo-Nicole Chai, Hok-Chai Yam, Nurlina Rosli, Azali Azlan, Ghows Azzam, Mardani Abdul Halim, Nazalan Najimudin
doi: https://doi.org/10.1101/2020.05.07.080796
Cleo-Nicole Chai
1School of Biological Sciences, Universiti Sains Malaysia, 11800 Penang, Malaysia
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Hok-Chai Yam
3Faculty of Applied Science, University College Sedaya International (UCSI), 56000 Kuala Lumpur, Malaysia
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Nurlina Rosli
1School of Biological Sciences, Universiti Sains Malaysia, 11800 Penang, Malaysia
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Azali Azlan
1School of Biological Sciences, Universiti Sains Malaysia, 11800 Penang, Malaysia
2USM-RIKEN International Centre for Ageing Science (URICAS), Universiti Sains Malaysia, 11800 Penang, Malaysia
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Ghows Azzam
1School of Biological Sciences, Universiti Sains Malaysia, 11800 Penang, Malaysia
2USM-RIKEN International Centre for Ageing Science (URICAS), Universiti Sains Malaysia, 11800 Penang, Malaysia
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Mardani Abdul Halim
1School of Biological Sciences, Universiti Sains Malaysia, 11800 Penang, Malaysia
2USM-RIKEN International Centre for Ageing Science (URICAS), Universiti Sains Malaysia, 11800 Penang, Malaysia
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  • For correspondence: nazalan@usm.my mardaniccb@gmail.com
Nazalan Najimudin
1School of Biological Sciences, Universiti Sains Malaysia, 11800 Penang, Malaysia
2USM-RIKEN International Centre for Ageing Science (URICAS), Universiti Sains Malaysia, 11800 Penang, Malaysia
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  • For correspondence: nazalan@usm.my mardaniccb@gmail.com
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Abstract

Rhodotorula sp. (USM-PSY62) is a psychrophilic yeast isolated from Antarctic sea ice and it grows optimally at 15 °C. This study was set up to observe how USM-PSY62 adapted to fluctuations in temperature. During cold adaptation, an elevated transcription of the CorA magnesium transporter gene in USM-PSY62 indicated a higher requirement for magnesium ions in order to gain additional enzyme cofactors or maintain cytoplasmic fluidity. The HepA homologue coding for DNA/RNA helicase was also over-expressed in cold condition possibly to reorganize secondary structures of DNA and RNA. An up-regulation of the catalase gene was also observed reflecting an increment in the concentration of reactive oxygen species and fluctuations in the associated antioxidant system. The YOP1 gene, which encodes a membrane protein associated with protein transport and membrane traffic, was the most down-regulated under cold shock condition. The genes responsible for the structural maintenance of chromosome (SMC) were also down-regulated when the temperature was shifted to 0 °C. Upon cold shock, the gene for heat shock factor protein 1 (HSF1) was also down-regulated. Hsf1 is a transcriptional regulator which regulate the heat shock responses. Although USM-PSY62 showed some common adaptive strategies as in several other psychrophilic organisms, new mechanisms were also uncovered.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://www.ncbi.nlm.nih.gov/bioproject/PRJNA522043

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 08, 2020.
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Transcriptomic response of an Antarctic yeast Rhodotorula sp. USM-PSY62 to temperature changes
Cleo-Nicole Chai, Hok-Chai Yam, Nurlina Rosli, Azali Azlan, Ghows Azzam, Mardani Abdul Halim, Nazalan Najimudin
bioRxiv 2020.05.07.080796; doi: https://doi.org/10.1101/2020.05.07.080796
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Transcriptomic response of an Antarctic yeast Rhodotorula sp. USM-PSY62 to temperature changes
Cleo-Nicole Chai, Hok-Chai Yam, Nurlina Rosli, Azali Azlan, Ghows Azzam, Mardani Abdul Halim, Nazalan Najimudin
bioRxiv 2020.05.07.080796; doi: https://doi.org/10.1101/2020.05.07.080796

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