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Developmentally Delayed Epigenetic Reprogramming Underlying the Pathogenesis of Preeclampsia

Wei He, Yuan Wei, Xiaoli Gong, Luyuan Chang, Wan Jin, Ke Liu, Xinghuan Wang, Yu Xiao, Wenjing Zhang, Qiong Chen, Kai Wu, Lili Liang, Jia Liu, Yawen Chen, Huanhuan Guo, Wenhao Chen, Jiexia Yang, Yiming Qi, Wei Dong, Meng Fu, Xiaojuan Li, Jiusi Liu, View ORCID ProfileYi Zhang, Aihua Yin
doi: https://doi.org/10.1101/2020.05.08.085290
Wei He
1The First Affiliated Hospital of Jinan University, Guangzhou, China
2Medical Genetic Center, Guangdong Woman and Children Hospital, Guangzhou, China
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Yuan Wei
3Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing, China
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Xiaoli Gong
3Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing, China
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Luyuan Chang
4Euler Technology, Beijing, China
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Wan Jin
4Euler Technology, Beijing, China
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Ke Liu
5Department of Medical Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
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Xinghuan Wang
6Department of Urology, Zhongnan Hospital of Wuhan University, Wuhan, China
7Department of Biological Repositories, Zhongnan Hospital of Wuhan University, Wuhan, China
8Human Genetic Resources Preservation Center of Hubei Province, Wuhan, China
9Laboratory of Precision Medicine, Zhongnan Hospital of Wuhan University, Wuhan, China
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Yu Xiao
6Department of Urology, Zhongnan Hospital of Wuhan University, Wuhan, China
7Department of Biological Repositories, Zhongnan Hospital of Wuhan University, Wuhan, China
8Human Genetic Resources Preservation Center of Hubei Province, Wuhan, China
9Laboratory of Precision Medicine, Zhongnan Hospital of Wuhan University, Wuhan, China
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Wenjing Zhang
4Euler Technology, Beijing, China
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Qiong Chen
4Euler Technology, Beijing, China
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Kai Wu
4Euler Technology, Beijing, China
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Lili Liang
4Euler Technology, Beijing, China
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Jia Liu
4Euler Technology, Beijing, China
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Yawen Chen
4Euler Technology, Beijing, China
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Huanhuan Guo
4Euler Technology, Beijing, China
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Wenhao Chen
4Euler Technology, Beijing, China
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Jiexia Yang
2Medical Genetic Center, Guangdong Woman and Children Hospital, Guangzhou, China
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Yiming Qi
2Medical Genetic Center, Guangdong Woman and Children Hospital, Guangzhou, China
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Wei Dong
10Maternity Ward, Haidian Maternal and Child Health Hospital, Beijing, China
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Meng Fu
11Department of Obstetrics and Gynecology, Haidian Maternal and Child Health Hospital, Beijing, China
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Xiaojuan Li
4Euler Technology, Beijing, China
14International Max Planck Research School for Genome Science, and University of Göttingen, Göttingen Center for Molecular Biosciences, Göttingen, Germany
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Jiusi Liu
4Euler Technology, Beijing, China
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Yi Zhang
4Euler Technology, Beijing, China
12Peking-Tsinghua Center of Life Sciences, Beijing, China
13School of Life Sciences, Peking University, Beijing, China
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  • ORCID record for Yi Zhang
  • For correspondence: yinaiwa@vip.126.com zy@eulertechnology.com
Aihua Yin
2Medical Genetic Center, Guangdong Woman and Children Hospital, Guangzhou, China
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  • For correspondence: yinaiwa@vip.126.com zy@eulertechnology.com
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Summary

Preeclampsia, a life-threatening pregnancy complication characterized by hypertension and multiorgan damage, affects 2-5% of pregnancies and causes 76,000 deaths per year. Most preeclampsia associated syndromes immediately dispel after removal of placenta, indicating a casual role of placenta in the pathogenesis. Failed transformation of spiral artery due to insufficient invasion and excessive apoptosis of trophoblast suggested developmental defects in preeclampsia placenta. However, the underlying molecular mechanisms that affected placenta development in preeclampsia remained elusive. Here we show that, in preeclampsia placenta, the epigenetic landscape formed during extraembryonic tissue differentiation was disrupted: dramatic chromatin accessibility shift affected known and novel genes implicated in preeclampsia. DNA methylation defects in preeclampsia affected lineage-defining PcG-controlled loci in trophectoderm. LTR12 retrotransposons associated with VCT/SCT-specific genes were hypermethylated. Meanwhile, hundreds of PcG-regulated EVT-specific gene promoters, which otherwise undergone post-ZGA extraembryonic-tissue-specific de novo methylation, were hypomethylated and hyper-activated. Together, these epigenetic defects resulted in placenta developmental delay in preeclampsia. The defective methylation pattern could be detected in serum cfDNA, and could be used to accurately predict preeclampsia at early pregnancy weeks in independent validation cohorts. Our data suggests that the preeclampsia placenta represents a stalled state of epigenetic reprogramming en route of development from trophectoderm to normal placenta.

Competing Interest Statement

Provisional patents were filed for the single-stranded NGS library preparation method Tequila 7N (WO 2020/073748) and the method for using cell-free DNA methylation pattern to predict placenta development status and pregnancy outcome (202010084924.X).

Footnotes

  • 1. Author updated; 2. Figure 1, 2, 3, 4, 5, 6 revised; 3. Supplementary Figures revised and added; 4. Supplementary Text revised; 5. Methods updated; 6. Reference list updated

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Developmentally Delayed Epigenetic Reprogramming Underlying the Pathogenesis of Preeclampsia
Wei He, Yuan Wei, Xiaoli Gong, Luyuan Chang, Wan Jin, Ke Liu, Xinghuan Wang, Yu Xiao, Wenjing Zhang, Qiong Chen, Kai Wu, Lili Liang, Jia Liu, Yawen Chen, Huanhuan Guo, Wenhao Chen, Jiexia Yang, Yiming Qi, Wei Dong, Meng Fu, Xiaojuan Li, Jiusi Liu, Yi Zhang, Aihua Yin
bioRxiv 2020.05.08.085290; doi: https://doi.org/10.1101/2020.05.08.085290
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Developmentally Delayed Epigenetic Reprogramming Underlying the Pathogenesis of Preeclampsia
Wei He, Yuan Wei, Xiaoli Gong, Luyuan Chang, Wan Jin, Ke Liu, Xinghuan Wang, Yu Xiao, Wenjing Zhang, Qiong Chen, Kai Wu, Lili Liang, Jia Liu, Yawen Chen, Huanhuan Guo, Wenhao Chen, Jiexia Yang, Yiming Qi, Wei Dong, Meng Fu, Xiaojuan Li, Jiusi Liu, Yi Zhang, Aihua Yin
bioRxiv 2020.05.08.085290; doi: https://doi.org/10.1101/2020.05.08.085290

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