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Performance of Abbott ID NOW COVID-19 rapid nucleic acid amplification test in nasopharyngeal swabs transported in viral media and dry nasal swabs, in a New York City academic institution

View ORCID ProfileAtreyee Basu, Tatyana Zinger, Kenneth Inglima, Kar-mun Woo, Onome Atie, Lauren Yurasits, Benjamin See, Maria E. Aguero-Rosenfeld
doi: https://doi.org/10.1101/2020.05.11.089896
Atreyee Basu
1NYU Grossman School of Medicine, Department of Pathology, New York, NY, USA
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  • ORCID record for Atreyee Basu
Tatyana Zinger
1NYU Grossman School of Medicine, Department of Pathology, New York, NY, USA
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Kenneth Inglima
2NYU Langone Health, Tisch Hospital New York, NY, USA
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Kar-mun Woo
3NYU Grossman School of Medicine, Department of Emergency Medicine, New York, NY, USA
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Onome Atie
3NYU Grossman School of Medicine, Department of Emergency Medicine, New York, NY, USA
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Lauren Yurasits
3NYU Grossman School of Medicine, Department of Emergency Medicine, New York, NY, USA
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Benjamin See
2NYU Langone Health, Tisch Hospital New York, NY, USA
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Maria E. Aguero-Rosenfeld
1NYU Grossman School of Medicine, Department of Pathology, New York, NY, USA
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  • For correspondence: Maria.Aguero-Rosenfeld@nyulangone.org
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Abstract

The recent emergence of the SARS-CoV-2 pandemic has posed formidable challenges for clinical laboratories seeking reliable laboratory diagnostic confirmation. The swift advance of the crisis in the United States has led to Emergency Use Authorization (EUA) facilitating the availability of molecular diagnostic assays without the more rigorous examination to which tests are normally subjected prior to FDA approval. Our laboratory currently uses two real time RT-PCR platforms, the Roche Cobas SARS-CoV2 and the Cepheid Xpert Xpress SARS-CoV-2. Both platforms demonstrate comparable performance; however, the run times for each assay are 3.5 hours and 45 minutes, respectively. In search for a platform with shorter turnaround time, we sought to evaluate the recently released Abbott ID NOW COVID-19 assay which is capable of producing positive results in as little as 5 minutes. We present here the results of comparisons between Abbott ID NOW COVID-19 and Cepheid Xpert Xpress SARS-CoV-2 using nasopharyngeal swabs transported in viral transport media and comparisons between Abbott ID NOW COVID-19 and Cepheid Xpert Xpress SARS-CoV-2 using nasopharyngeal swabs transported in viral transport media for Cepheid and dry nasal swabs for Abbott ID NOW. Regardless of method of collection and sample type, Abbott ID NOW COVID-19 had negative results in a third of the samples that tested positive by Cepheid Xpert Xpress when using nasopharyngeal swabs in viral transport media and 45% when using dry nasal swabs.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Rearranged for clarity and expansion on Discussion as suggested by JCM peer review process. One additional positive result by Abbott ID NOW not recorded correctly in the previous version was added this time. The Positive percent agreement between ID NOW and Xpert Xpress changed from 51.6% (16/31) to 54.8% (17/31)

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted May 29, 2020.
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Performance of Abbott ID NOW COVID-19 rapid nucleic acid amplification test in nasopharyngeal swabs transported in viral media and dry nasal swabs, in a New York City academic institution
Atreyee Basu, Tatyana Zinger, Kenneth Inglima, Kar-mun Woo, Onome Atie, Lauren Yurasits, Benjamin See, Maria E. Aguero-Rosenfeld
bioRxiv 2020.05.11.089896; doi: https://doi.org/10.1101/2020.05.11.089896
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Performance of Abbott ID NOW COVID-19 rapid nucleic acid amplification test in nasopharyngeal swabs transported in viral media and dry nasal swabs, in a New York City academic institution
Atreyee Basu, Tatyana Zinger, Kenneth Inglima, Kar-mun Woo, Onome Atie, Lauren Yurasits, Benjamin See, Maria E. Aguero-Rosenfeld
bioRxiv 2020.05.11.089896; doi: https://doi.org/10.1101/2020.05.11.089896

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