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Direct and indirect effects of maternal, paternal, and offspring genotypes: Trio-GCTA

View ORCID ProfileEspen Moen Eilertsen, View ORCID ProfileEshim Shahid Jami, View ORCID ProfileTom A. McAdams, View ORCID ProfileLaurie J. Hannigan, View ORCID ProfileAlexandra S. Havdahl, View ORCID ProfilePer Minor Magnus, View ORCID ProfileDavid M. Evans, View ORCID ProfileEivind Ystrom
doi: https://doi.org/10.1101/2020.05.15.097840
Espen Moen Eilertsen
1Department of Mental Disorders, Norwegian Institute of Public Health, Oslo, Norway
6PROMENTA Research Center, Department of Psychology, University of Oslo, Oslo, Norway
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  • For correspondence: EspenMoen.Eilertsen@fhi.no
Eshim Shahid Jami
2Department of Biological Psychology, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
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Tom A. McAdams
3Social, Genetic & Developmental Psychiatry Centre, Institute of Psychiatry, Psychology & Neuroscience, King’s College, London, UK
6PROMENTA Research Center, Department of Psychology, University of Oslo, Oslo, Norway
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Laurie J. Hannigan
4Nic Waals Institute, Lovisenberg Diakonale Hospital, Oslo, Norway
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Alexandra S. Havdahl
1Department of Mental Disorders, Norwegian Institute of Public Health, Oslo, Norway
4Nic Waals Institute, Lovisenberg Diakonale Hospital, Oslo, Norway
5MRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK
6PROMENTA Research Center, Department of Psychology, University of Oslo, Oslo, Norway
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Per Minor Magnus
9Centre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway
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David M. Evans
5MRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK
7University of Queensland Diamantina Institute, University of Queensland, Brisbane, QLD, Australia
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Eivind Ystrom
1Department of Mental Disorders, Norwegian Institute of Public Health, Oslo, Norway
6PROMENTA Research Center, Department of Psychology, University of Oslo, Oslo, Norway
8PharmacoEpidemiology and Drug Safety Research Group, School of Pharmacy, University of Oslo, Oslo, Norway
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Abstract

Indirect genetic effects from relatives may result in misleading quantifications of heritability, but can also be of interest in their own right. In this paper we propose Trio-GCTA, a model for separating direct and indirect genetic effects when genome-wide single nucleotide polymorphism data have been collected from parent-offspring trios. The model is applicable to phenotypes obtained from any of the family members. We discuss appropriate parameter interpretations and apply the method to four exemplar phenotypes; offspring birth weight, offspring temperament, maternal relationship satisfaction, and paternal body-mass index, using real data from the Norwegian Mother, Father and Child Cohort Study (MoBa).

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 16, 2020.
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Direct and indirect effects of maternal, paternal, and offspring genotypes: Trio-GCTA
Espen Moen Eilertsen, Eshim Shahid Jami, Tom A. McAdams, Laurie J. Hannigan, Alexandra S. Havdahl, Per Minor Magnus, David M. Evans, Eivind Ystrom
bioRxiv 2020.05.15.097840; doi: https://doi.org/10.1101/2020.05.15.097840
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Direct and indirect effects of maternal, paternal, and offspring genotypes: Trio-GCTA
Espen Moen Eilertsen, Eshim Shahid Jami, Tom A. McAdams, Laurie J. Hannigan, Alexandra S. Havdahl, Per Minor Magnus, David M. Evans, Eivind Ystrom
bioRxiv 2020.05.15.097840; doi: https://doi.org/10.1101/2020.05.15.097840

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