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Glycan processing in the Golgi – optimal information coding and constraints on cisternal number and enzyme specificity

Alkesh Yadav, Quentin Vagne, Pierre Sens, Garud Iyengar, Madan Rao
doi: https://doi.org/10.1101/2020.05.18.101444
Alkesh Yadav
1Raman Research Institute, Bangalore 560080, India
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Quentin Vagne
2Laboratoire Physico Chimie Curie, Institut Curie, CNRS UMR168, 75005 Paris, France
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Pierre Sens
2Laboratoire Physico Chimie Curie, Institut Curie, CNRS UMR168, 75005 Paris, France
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Garud Iyengar
3Industrial Engineering and Operations Research, Columbia University, New York 10027, USA
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Madan Rao
4Simons Centre for the Study of Living Machines, National Centre for Biological Sciences (TIFR), Bangalore 560065, India
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  • For correspondence: madan@ncbs.res.in
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Abstract

Many proteins that undergo sequential enzymatic modification in the Golgi cisternae are displayed at the plasma membrane as cell identity markers. The modified proteins, called glycans, represent a molecular code. The fidelity of this glycan code is measured by how accurately the glycan synthesis machinery realises the desired target glycan distribution for a particular cell type and niche. In this paper, we quantitatively analyse the tradeoffs between the number of cisternae and the number and specificity of enzymes, in order to synthesize a prescribed target glycan distribution of a certain complexity. We find that to synthesize complex distributions, such as those observed in real cells, one needs to have multiple cisternae and precise enzyme partitioning in the Golgi. Additionally, for fixed number of enzymes and cisternae, there is an optimal level of specificity of enzymes that achieves the target distribution with high fidelity. Our results show how the complexity of the target glycan distribution places functional constraints on the Golgi cisternal number and enzyme specificity.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted May 19, 2020.
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Glycan processing in the Golgi – optimal information coding and constraints on cisternal number and enzyme specificity
Alkesh Yadav, Quentin Vagne, Pierre Sens, Garud Iyengar, Madan Rao
bioRxiv 2020.05.18.101444; doi: https://doi.org/10.1101/2020.05.18.101444
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Glycan processing in the Golgi – optimal information coding and constraints on cisternal number and enzyme specificity
Alkesh Yadav, Quentin Vagne, Pierre Sens, Garud Iyengar, Madan Rao
bioRxiv 2020.05.18.101444; doi: https://doi.org/10.1101/2020.05.18.101444

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