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PYCR1-dependent proline synthesis in cancer-associated fibroblasts is required for the deposition of pro-tumorigenic extracellular matrix

Emily J Kay, Karla Paterson, Carla Riero Domingo, David Sumpton, Henry Daebritz, Saverio Tardito, Claudia Boldrini, Juan R Hernandez-Fernaud, Dimitris Athineos, Sandeep Dhayade, Ekaterina Stepanova, Enio Gjerga, Lisa J Neilson, Sergio Lilla, Ann Hedley, Grigorios Koulouras, Grace McGregor, Craig Jamieson, Radia Marie Johnson, Morag Park, Kristina Kirschner, Crispin Miller, Jurre J Kamphorst, Fabricio Loayza-Puch, Julio Saez-Rodriguez, Massimiliano Mazzone, Karen Blyth, Michele Zagnoni, View ORCID ProfileSara Zanivan
doi: https://doi.org/10.1101/2020.05.30.125237
Emily J Kay
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
2Institute of Cancer Sciences, University of Glasgow, Glasgow, G611QH, UK
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Karla Paterson
3Centre for Microsystems and Photonics, EEE Department, University of Strathclyde, Glasgow, UK
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Carla Riero Domingo
4Laboratory of Tumor Inflammation and Angiogenesis, Center for Cancer Biology (CCB), VIB, 3000 Leuven, Belgium
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David Sumpton
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Henry Daebritz
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Saverio Tardito
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
2Institute of Cancer Sciences, University of Glasgow, Glasgow, G611QH, UK
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Claudia Boldrini
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Juan R Hernandez-Fernaud
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Dimitris Athineos
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Sandeep Dhayade
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Ekaterina Stepanova
5Translational Control and Metabolism, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany
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Enio Gjerga
6Heidelberg University, Faculty of Medicine, Institute for Computational Biomedicine, Bioquant, INF 267, 69120 Heidelberg, Germany
7RWTH Aachen University, Faculty of Medicine, Joint Research Centre for Computational Biomedicine (JRC-COMBINE), Aachen, Germany
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Lisa J Neilson
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Sergio Lilla
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Ann Hedley
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Grigorios Koulouras
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
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Grace McGregor
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
2Institute of Cancer Sciences, University of Glasgow, Glasgow, G611QH, UK
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Craig Jamieson
8Department of Pure and Applied Chemistry, Thomas Graham Building, University of Strathclyde, Glasgow G1 1XL, UK
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Radia Marie Johnson
9Rosalind and Morris Goodman Cancer Research Centre, McGill University, Montreal, QC H3A 1A3, Canada
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Morag Park
10Department of Biochemistry, McGill University, Montreal, QC H3A 1A3, Canada
11Department of Medicine, McGill University, Montreal, QC H3A 1A3, Canada
12Department of Oncology, McGill University, Montreal, QC H3A 1A3, Canada
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Kristina Kirschner
2Institute of Cancer Sciences, University of Glasgow, Glasgow, G611QH, UK
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Crispin Miller
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
2Institute of Cancer Sciences, University of Glasgow, Glasgow, G611QH, UK
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Jurre J Kamphorst
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
2Institute of Cancer Sciences, University of Glasgow, Glasgow, G611QH, UK
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Fabricio Loayza-Puch
5Translational Control and Metabolism, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany
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Julio Saez-Rodriguez
6Heidelberg University, Faculty of Medicine, Institute for Computational Biomedicine, Bioquant, INF 267, 69120 Heidelberg, Germany
7RWTH Aachen University, Faculty of Medicine, Joint Research Centre for Computational Biomedicine (JRC-COMBINE), Aachen, Germany
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Massimiliano Mazzone
4Laboratory of Tumor Inflammation and Angiogenesis, Center for Cancer Biology (CCB), VIB, 3000 Leuven, Belgium
13Laboratory of Tumor Inflammation and Angiogenesis, Department of Oncology, KU Leuven, 3000 Leuven, Belgium
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Karen Blyth
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
2Institute of Cancer Sciences, University of Glasgow, Glasgow, G611QH, UK
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Michele Zagnoni
3Centre for Microsystems and Photonics, EEE Department, University of Strathclyde, Glasgow, UK
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Sara Zanivan
1Cancer Research UK Beatson Institute, Glasgow G611BD, UK
2Institute of Cancer Sciences, University of Glasgow, Glasgow, G611QH, UK
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  • ORCID record for Sara Zanivan
  • For correspondence: s.zanivan@beatson.gla.ac.uk
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Abstract

TElevated production of collagen-rich extracellular matrix (ECM) is a hallmark of cancer associated fibroblasts (CAFs) and a central driver of cancer aggressiveness. How to target ECM production to oppose cancer is yet unclear, since targeting CAFs has been shown to restrain but also promote cancer progression. Metabolic rewiring is a hallmark of CAFs. Here we find that proline, which is a highly abundant amino acid in collagen proteins, is newly synthesised from glutamine to make tumour collagen in breast cancer xenografts, and that its production is elevated in breast cancer CAFs. PYCR1 is the rate-limiting enzyme for proline synthesis and is highly expressed in the tumour stroma of breast cancer patients and in CAFs. Reducing PYCR1 levels in CAFs is sufficient to reduce tumour collagen production, tumour growth and metastatic spread in vivo and cancer cell proliferation in vitro. PYCR1 and COL1A1 are overexpressed in patients with invasive ductal carcinoma with poor prognosis. Both collagen and glutamine-derived proline synthesis in CAFs are enhanced by increased pyruvate dehydrogenase-derived acetyl-CoA levels, via gene expression regulation through the epigenetic regulator histone acetyl transferase EP300. Altogether, our work unveils unprecedented roles of CAF metabolism to support pro-tumorigenic collagen production. PYCR1 is a recognised cancer cell vulnerability and potential target for therapy, hence, our work provides evidence that targeting PYCR1 in tumours may have the additional benefit of halting the production of pro-tumorigenic ECM.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted August 17, 2021.
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PYCR1-dependent proline synthesis in cancer-associated fibroblasts is required for the deposition of pro-tumorigenic extracellular matrix
Emily J Kay, Karla Paterson, Carla Riero Domingo, David Sumpton, Henry Daebritz, Saverio Tardito, Claudia Boldrini, Juan R Hernandez-Fernaud, Dimitris Athineos, Sandeep Dhayade, Ekaterina Stepanova, Enio Gjerga, Lisa J Neilson, Sergio Lilla, Ann Hedley, Grigorios Koulouras, Grace McGregor, Craig Jamieson, Radia Marie Johnson, Morag Park, Kristina Kirschner, Crispin Miller, Jurre J Kamphorst, Fabricio Loayza-Puch, Julio Saez-Rodriguez, Massimiliano Mazzone, Karen Blyth, Michele Zagnoni, Sara Zanivan
bioRxiv 2020.05.30.125237; doi: https://doi.org/10.1101/2020.05.30.125237
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PYCR1-dependent proline synthesis in cancer-associated fibroblasts is required for the deposition of pro-tumorigenic extracellular matrix
Emily J Kay, Karla Paterson, Carla Riero Domingo, David Sumpton, Henry Daebritz, Saverio Tardito, Claudia Boldrini, Juan R Hernandez-Fernaud, Dimitris Athineos, Sandeep Dhayade, Ekaterina Stepanova, Enio Gjerga, Lisa J Neilson, Sergio Lilla, Ann Hedley, Grigorios Koulouras, Grace McGregor, Craig Jamieson, Radia Marie Johnson, Morag Park, Kristina Kirschner, Crispin Miller, Jurre J Kamphorst, Fabricio Loayza-Puch, Julio Saez-Rodriguez, Massimiliano Mazzone, Karen Blyth, Michele Zagnoni, Sara Zanivan
bioRxiv 2020.05.30.125237; doi: https://doi.org/10.1101/2020.05.30.125237

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