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Insights on cross-species transmission of SARS-CoV-2 from structural modeling

View ORCID ProfileJoão PGLM Rodrigues, View ORCID ProfileSusana Barrera-Vilarmau, View ORCID ProfileJoão MC Teixeira, View ORCID ProfileElizabeth Seckel, View ORCID ProfilePanagiotis Kastritis, View ORCID ProfileMichael Levitt
doi: https://doi.org/10.1101/2020.06.05.136861
João PGLM Rodrigues
1Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA
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  • For correspondence: joaor@stanford.edu
Susana Barrera-Vilarmau
2Institute of Advanced Chemistry of Catalonia (IQAC), CSIC, Barcelona, Spain
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  • ORCID record for Susana Barrera-Vilarmau
João MC Teixeira
3Program in Molecular Medicine, Hospital for Sick Children, Toronto, Ontario, Canada
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  • ORCID record for João MC Teixeira
Elizabeth Seckel
4Department of Obstetrics and Gynecology, Stanford University School of Medicine, Stanford, CA, USA
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Panagiotis Kastritis
5ZIK HALOMEM & Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Biozentrum, Halle (Saale), Germany
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Michael Levitt
1Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA
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Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is responsible for the ongoing global pandemic that has infected more than 14 million people in more than 180 countries worldwide. Like other coronaviruses, SARS-CoV-2 is thought to have been transmitted to humans from wild animals. Given the scale and widespread geographical distribution of the current pandemic, the question emerges whether human-to-animal transmission is possible and if so, which animal species are most at risk. Here, we investigated the structural properties of several ACE2 orthologs bound to the SARS-CoV-2 spike protein. We found that species known not to be susceptible to SARS-CoV-2 infection have non-conservative mutations in several ACE2 amino acid residues that disrupt key polar and charged contacts with the viral spike protein. Our models also predict affinity-enhancing mutations that could be used to design ACE2 variants for therapeutic purposes. Finally, our study provides a blueprint for modeling viral-host protein interactions and highlights several important considerations when designing these computational studies and analyzing their results.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • This revised version adds a new and deeper analysis of possible affinity-enhancing mutations on hACE2, as well as redesigned figures for clarity and reader-friendliness.

  • https://github.com/joaorodrigues/ace2-animal-models/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted July 23, 2020.
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Insights on cross-species transmission of SARS-CoV-2 from structural modeling
João PGLM Rodrigues, Susana Barrera-Vilarmau, João MC Teixeira, Elizabeth Seckel, Panagiotis Kastritis, Michael Levitt
bioRxiv 2020.06.05.136861; doi: https://doi.org/10.1101/2020.06.05.136861
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Insights on cross-species transmission of SARS-CoV-2 from structural modeling
João PGLM Rodrigues, Susana Barrera-Vilarmau, João MC Teixeira, Elizabeth Seckel, Panagiotis Kastritis, Michael Levitt
bioRxiv 2020.06.05.136861; doi: https://doi.org/10.1101/2020.06.05.136861

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