Abstract
Motivation Quantification of tumor heterogeneity is essential to better understand cancer progressionand to adapt therapeutic treatments to patient specificities.
Results We present DECONbench, a web-based application to benchmark computational methods dedicated to quantify of cell-type heterogeneity in cancer. DECONbench includes benchmark datasets, computational methods and performance evaluation. It allows submission of new methods.
Availability and implementation DECONbench is hosted on the open source codalab competition platform. It is freely available at: https://competitions.codalab.org/competitions/23660.
Competing Interest Statement
The authors have declared no competing interest.
Footnotes
↵‡ HADACA consortium authors: N.Alcala, A. Arnaud, F. Avila Cobos, Luciana Batista, A-F. Batto, Y. Blum, F. Chuffart, J. Cros, C. Decamps, L. Dirian, D. Doncevic, G. Durif,SY Bahena Hernandez, M. Jakobi, R. Jardillier, M. Jeanmougin, P. Jedynak, B. Jumentier, A. Kakoichankava, Maria Kondili, J. Liu, T.Maie, J. Marécaille, J. Merlevede, M. Meylan, P. Nazarov, K. Newar, K. Nyrén, F. Petitprez, C. Novella Rausell, M. Richard, M. Scherer,N. Sompairac, K. Waury, T. Xie & M-A. Zacharouli. A full list of Consortium members and their affiliations is available at the end of the text
↵* The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors
↵# The authors wish it to be known that, in their opinion, the last two authors should be regarded as joint Last Authors